Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2193
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                 131   3e-31
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   77   6e-15
SB_44975| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_9758| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.31 
SB_48096| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_39293| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_31731| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.41 
SB_45710| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                28   5.1  
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score =  131 bits (317), Expect = 3e-31
 Identities = 57/97 (58%), Positives = 76/97 (78%)
 Frame = +3

Query: 216 LSSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGSLHMS 395
           +S+G+DNNEL++NL    YI++ +VE VFR +DR DY      + AYKDLAW+  ++H+S
Sbjct: 5   VSAGKDNNELVENLKEAGYIKTPKVEQVFREVDRCDYFPEGAEEHAYKDLAWKQKNVHLS 64

Query: 396 APCIYSEVMEALELKTGLTFLNVCSGTGYLNTLAGLI 506
           APCIYSEVME LEL+ GL+FLN+ SGTGYL+T+ GLI
Sbjct: 65  APCIYSEVMECLELEEGLSFLNLGSGTGYLSTMVGLI 101


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = +3

Query: 243 LIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGS-LHMSAPCIYSEV 419
           ++D  +    I S EVE+ FRA+ R  ++  E+ ++AY D   R    +HMSAP +Y+ V
Sbjct: 1   MVDKFVHTGIITSKEVEDAFRAVPRGAFVPPELYEEAYYDQPLRGDPHIHMSAPHMYAGV 60

Query: 420 MEALELKTGLTFLNVCSGTGYLNTLAGLI 506
           +EAL+L  GL+FLNV SGTGY + L G I
Sbjct: 61  LEALDLCPGLSFLNVGSGTGYFSCLVGYI 89


>SB_44975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -2

Query: 363 DPYTPDPVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQSTHYYHALNSSAPPIFNDS 190
           DPY   P +L+  N+H R+   R   P  GC     G  +T+YY  LN     I ND+
Sbjct: 5   DPYERKPQILRKDNQHKRITNNRKDSP--GC----GG--NTYYYEILNVMGDVIRNDT 54


>SB_9758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -2

Query: 363 DPYTPDPVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQSTHYYHALNSSAPPIFNDS 190
           DPY   P +L+  N+H R+   R   P  GC     G  +T+YY  LN     I ND+
Sbjct: 5   DPYERKPQILRKDNQHKRITNNRKDSP--GC----GG--NTYYYEILNVMGDVIRNDT 54


>SB_48096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -2

Query: 363 DPYTPDPVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQSTHYYHALNSSAPPIFNDS 190
           DPY   P +L+  N+H R+   R   P  GC     G  +T+YY  LN     I ND+
Sbjct: 5   DPYERKPQILRKDNQHKRITNNRKDSP--GC----GG--NTYYYEILNVMGDVIRNDT 54


>SB_39293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -2

Query: 363 DPYTPDPVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQSTHYYHALNSSAPPIFNDS 190
           DPY   P +L+  N+H R+   R   P  GC     G  +T+YY  LN     I ND+
Sbjct: 5   DPYERKPQILRKDNQHKRITNNRKDSP--GC----GG--NTYYYEILNVMGDVIRNDT 54


>SB_31731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -2

Query: 363 DPYTPDPVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQSTHYYHALNSSAPPIFNDS 190
           DPY   P +L+  N+H R+   R   P  GC     G  +T+YY  LN     I ND+
Sbjct: 5   DPYERKPQILRKDNQHKRITNNRKDSP--GC----GG--NTYYYEILNVMGNVIRNDT 54


>SB_45710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 231 DNNELIDNLMRGKYIRSAEVENVFRALDRADYMSS-EVRDQAYKDL 365
           +N+E++ +    KY R    +  FR LDR D   S E R +A KDL
Sbjct: 17  NNDEVVVDKKSKKYRRIVRRKAAFRYLDRVDAKQSLEARREANKDL 62


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 396 APCIYSEVMEALELKTGLTFLNVCSGTGYL 485
           APCI   V  + +LKTG  F+  C+G G+L
Sbjct: 368 APCIRMIVTSSSKLKTGTLFIVPCTG-GHL 396


>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 287 SGERIPGTRSCRLHVFRSTGSGV*GSCLEEWIS-SYVSTVYLQ*SNGSPRTENGLNFPER 463
           S +R+P +R+CR       G  V  S L+  IS + VST YL   +  P   +  NF  +
Sbjct: 66  SFDRVPQSRACRSIECLKVGHVVRSSALKSGISYNRVSTTYLNQLHEQPHANS--NFISQ 123

Query: 464 L 466
           L
Sbjct: 124 L 124


>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 904

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 279 SAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGSLHMSAP 401
           S+E  + FRA+ +   MS    +   +D+A R   LH   P
Sbjct: 572 SSEARSAFRAVHQDVAMSEVTNEALQRDMAIRAAKLHKQPP 612


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,248,596
Number of Sequences: 59808
Number of extensions: 321554
Number of successful extensions: 786
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)