Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2193
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    60   9e-10
U15129-1|AAB60240.1|  225|Caenorhabditis elegans protein-L-isoas...    47   9e-06
U09669-1|AAA82166.1|  225|Caenorhabditis elegans protein-L-isoas...    47   9e-06
AF022968-2|AAB69887.1|  225|Caenorhabditis elegans Protein carbo...    47   9e-06
AF022968-1|ABR92613.1|  219|Caenorhabditis elegans Protein carbo...    38   0.006
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    33   0.16 
AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    31   0.63 
AF045642-13|AAC02585.1|  293|Caenorhabditis elegans Hypothetical...    28   3.4  
Z94800-1|CAB08161.2|  491|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z82288-9|CAB05328.2|  491|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z73104-9|CAA97438.2|  491|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 8/104 (7%)
 Frame = +3

Query: 219 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMS-SEVRDQAYKDLA-------WR 374
           +S   N++LID L++   IR   +E  FR +DR+D++  SE +      L        + 
Sbjct: 3   NSESQNDDLIDFLVKNDTIRRRNIERAFRLVDRSDFLPISERKFTRLPSLTSTEPGGPFY 62

Query: 375 NGSLHMSAPCIYSEVMEALELKTGLTFLNVCSGTGYLNTLAGLI 506
            G+L + A  IY+++ + L+L+ G +FL++ +G+GYL+T+AG++
Sbjct: 63  PGALRVGAIDIYAKLFDYLDLRKGHSFLHIGTGSGYLSTIAGIL 106


>U15129-1|AAB60240.1|  225|Caenorhabditis elegans
           protein-L-isoaspartate (D-aspartate)O-methyltransferase
           protein.
          Length = 225

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
 Frame = +3

Query: 219 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 395
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPR----APYEDAPQRIGYNATVS 60

Query: 396 APCIYSEVMEALE--LKTGLTFLNVCSGTGYLNTLAGLI 506
           AP +++  ++ L+  L  G   L+V SG+GYL     ++
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMM 99


>U09669-1|AAA82166.1|  225|Caenorhabditis elegans
           protein-L-isoaspartate (D-aspartate)O-methyltransferase
           protein.
          Length = 225

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
 Frame = +3

Query: 219 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 395
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPR----APYEDAPQRIGYNATVS 60

Query: 396 APCIYSEVMEALE--LKTGLTFLNVCSGTGYLNTLAGLI 506
           AP +++  ++ L+  L  G   L+V SG+GYL     ++
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMM 99


>AF022968-2|AAB69887.1|  225|Caenorhabditis elegans Protein
           carboxymethyltransferaseprotein 1, isoform a protein.
          Length = 225

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
 Frame = +3

Query: 219 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 395
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPR----APYEDAPQRIGYNATVS 60

Query: 396 APCIYSEVMEALE--LKTGLTFLNVCSGTGYLNTLAGLI 506
           AP +++  ++ L+  L  G   L+V SG+GYL     ++
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMM 99


>AF022968-1|ABR92613.1|  219|Caenorhabditis elegans Protein
           carboxymethyltransferaseprotein 1, isoform b protein.
          Length = 219

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 28/96 (29%), Positives = 44/96 (45%)
 Frame = +3

Query: 219 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGSLHMSA 398
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G     A
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPR----APYEDAPQRIGYNATHA 60

Query: 399 PCIYSEVMEALELKTGLTFLNVCSGTGYLNTLAGLI 506
             +  + ++   L  G   L+V SG+GYL     ++
Sbjct: 61  AAL--DYLQN-HLVAGAKALDVGSGSGYLTVCMAMM 93


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = +3

Query: 114  VEKQVTSRQESAEVRGKFFIKVVVEKNH*KWEVHLSSGRDNNELIDNLMRGKYIRSAEVE 293
            VE+++   +E AE   K ++KVV   +   W + +SS + + +L   + R K   + E+ 
Sbjct: 3048 VEQKLKEAREPAEKSLKDYLKVVKYNDLNLWNIRVSSTKAHAQLYKIVRRFKDAINVELH 3107

Query: 294  NVFRALDRADYMSSEVRDQ 350
            + F  L + D    +V  Q
Sbjct: 3108 DDFGVLQKVDEWKRKVLQQ 3126


>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 345 PVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQSTHY 235
           PV L T NRH  V  ++S +P N  + L  G +   Y
Sbjct: 13  PVDLFTENRHRLVDALKSKVPANSVVLLQGGVEKNRY 49


>AF045642-13|AAC02585.1|  293|Caenorhabditis elegans Hypothetical
           protein C17H12.6 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 236 IITP*TQVHLPFLMILFYHHLYEELPSHL 150
           ++T    +H  F MI+FY  +Y E  +HL
Sbjct: 115 VVTKSVDMHSSFRMIVFYQPMYTETVTHL 143


>Z94800-1|CAB08161.2|  491|Caenorhabditis elegans Hypothetical
           protein K08D8.6 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 264 LSSGCQSTHYYHALNSSAPPIFNDSFLPPPL*RTSLAPQLILDVTSLVFQHILHFI 97
           ++SG  ST Y    NSS  P+F   F  P + ++     L+  + S++   +  F+
Sbjct: 138 INSGQNSTTYNIHPNSSPLPLFGGDFEDPVIIQSDTQVSLLATLPSIIITDMAPFM 193


>Z82288-9|CAB05328.2|  491|Caenorhabditis elegans Hypothetical
           protein K08D8.6 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 264 LSSGCQSTHYYHALNSSAPPIFNDSFLPPPL*RTSLAPQLILDVTSLVFQHILHFI 97
           ++SG  ST Y    NSS  P+F   F  P + ++     L+  + S++   +  F+
Sbjct: 138 INSGQNSTTYNIHPNSSPLPLFGGDFEDPVIIQSDTQVSLLATLPSIIITDMAPFM 193


>Z73104-9|CAA97438.2|  491|Caenorhabditis elegans Hypothetical
           protein K08D8.6 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 264 LSSGCQSTHYYHALNSSAPPIFNDSFLPPPL*RTSLAPQLILDVTSLVFQHILHFI 97
           ++SG  ST Y    NSS  P+F   F  P + ++     L+  + S++   +  F+
Sbjct: 138 INSGQNSTTYNIHPNSSPLPLFGGDFEDPVIIQSDTQVSLLATLPSIIITDMAPFM 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,412,624
Number of Sequences: 27780
Number of extensions: 248119
Number of successful extensions: 639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)