Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2190
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.6  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.6  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   6.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = +1

Query: 13  GDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDS 192
           GD  DG+   + +     + D  T P D    L    +S G +S L + T    +     
Sbjct: 645 GDGNDGNQSDDNLGSCGSMGDAHTPPEDDAESLNQSISSPGALSGLSSLTSPGGMVLPSP 704

Query: 193 EMNGGSPTHSPA 228
             +  SP+ S A
Sbjct: 705 STSVASPSVSVA 716


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = +1

Query: 13  GDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDS 192
           GD  DG+   + +     + D  T P D    L    +S G +S L + T    +     
Sbjct: 537 GDGNDGNQSDDNLGSCGSMGDAHTPPEDDAESLNQSISSPGALSGLSSLTSPGGMVLPSP 596

Query: 193 EMNGGSPTHSPA 228
             +  SP+ S A
Sbjct: 597 STSVASPSVSVA 608


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 422 FGRLLTNYYSIYTHHDVLKANRYEPLHK--*KTCHLIYLY 535
           FG+LL N Y+I  +    + N Y  L +     C+ IYL+
Sbjct: 115 FGKLLINLYTINYNFKESERNDYVSLLQLVFVFCYFIYLF 154


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 59  NVSSATHRRVRVTLTRDFSDRQRAMDP 139
           N +  T  RVR  +   F+D Q+A+ P
Sbjct: 252 NCTGDTSWRVRYMVADKFTDLQKAVGP 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,107
Number of Sequences: 336
Number of extensions: 4052
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)