Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2190
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 31 0.23
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 28 1.2
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 27 2.2
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 2.9
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 3.8
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 27 3.8
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 5.0
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 26 5.0
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 26 5.0
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 208 SPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGYKSMNGQMNTMTSINGTSN 375
SP + P + + ++ +TPS +RE A H NPI G G N M S + T++
Sbjct: 412 SPFNKPNSVHSEASRNTPSSIDRENASH-SNPIMMHG-NDFGGNFNNMQSRSTTTS 465
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +1
Query: 148 LITDTIRSNIQFGDSEMNG-----GSPTHSPAK 231
++ DT R I+F DS +NG G+P +PAK
Sbjct: 36 VMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAK 68
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 105 ETFRTGSEQWTRFSIDHRHH 164
+ F G+ +W+ F I+H HH
Sbjct: 160 KAFYWGTSEWSAFEIEHAHH 179
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 94 DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGE 273
D +R G V L + +SNI+ SPT SP + +G+ +S+ S
Sbjct: 445 DDETRTVGTPTETISVVRLRRSSSQSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHS 504
Query: 274 REPAE 288
++ A+
Sbjct: 505 KKSAQ 509
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 1 EIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRSNIQ 180
E F+ D SPK R + TR R S+ FG + SN P + DT +S+ +
Sbjct: 509 ERFHSRSVDASPKAV-RRESRSFFPSLTRKR---SKFFGSSQSNSPKDSPLRDTHKSSDE 564
Query: 181 FGDSE 195
+S+
Sbjct: 565 HSESK 569
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 29 AAPRRTAWRANVSSATHRR 85
A P++ W+A+V+S+TH R
Sbjct: 217 AEPKKGLWQASVTSSTHER 235
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +1
Query: 73 DTPTRPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFG-DSEMNGGSPTHSPAKMMNGSA 249
D P++ ++ L + + ++ +S++ G S+ + G T P + NG+
Sbjct: 483 DLPSKISRVNAELQAHGSQRSSID--VSKENKSSVADGPSSQAHNGPSTQPPEALPNGTD 540
Query: 250 YSTPSRGEREPAEH*GNPITGDGYKSMNGQMNTMTSINGT------SNIIYYNRVPPGG 408
S+ E + + DG K +G +++ +S T N+I N V P G
Sbjct: 541 PSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFTGKRVRLGNVIESNVVSPDG 599
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 61 RVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRS--NIQF 183
+ V D +DT SR+ + NGP+S L+ D +R NI F
Sbjct: 482 KCVVDIKGEKKDTPSRVVIEGVGNGPLSALV-DALRRQFNISF 523
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 148 LITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSA 249
L+T + + + GD MNG S A +MN S+
Sbjct: 457 LLTGSWYNGVSIGDCIMNGHSTARKLASLMNSSS 490
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 576 ILNGLHMNQTFILQYYRLTCHMLH 647
+ G +MN+ F + Y L C LH
Sbjct: 186 VSKGSYMNEAFTIALYALVCRELH 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,714
Number of Sequences: 5004
Number of extensions: 66104
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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