Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2190
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1261 + 27410921-27413401 31 1.3
10_02_0110 - 5371536-5372882 30 2.3
09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440... 29 5.2
01_05_0551 + 23169751-23170491 29 5.2
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 29 5.2
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 28 6.9
04_01_0176 + 2003707-2004130,2004689-2004861 28 9.2
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 28 9.2
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540... 28 9.2
>12_02_1261 + 27410921-27413401
Length = 826
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Frame = +1
Query: 22 TDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQA-ASNGPVSPLITDTIRSNIQFGDSE- 195
TDG+ K++ A R V+++ + +A +NG +++++ Q D
Sbjct: 568 TDGN-KEHASAEVRTVQESYASLEAMVPEMLMKAEVANGTNVAAASNSLKDEGQRADQPS 626
Query: 196 ----MNGGSPTHSPAKMMNGS----AYSTPSRGEREPAEH*GNP 303
+ G + HS + N + AYSTP + +++ AEH GNP
Sbjct: 627 LKKMVPGANVNHSSGEATNSAFPDIAYSTPKKKKKKIAEHFGNP 670
>10_02_0110 - 5371536-5372882
Length = 448
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 301 GCLSVRLAPSHLGWVSNKRFRSSSWRGSA*DFR 203
G + RLAP H GW+S +R R + R + D R
Sbjct: 11 GAAAARLAPYHKGWLSRRRRRGRTNRRARNDDR 43
>09_04_0543 -
18442571-18443111,18443232-18443426,18443507-18444045,
18444205-18444375,18444794-18445219
Length = 623
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +1
Query: 115 GQAASN--GPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAE 288
GQA+ + G +P + + QFG S N P G A PS G PA+
Sbjct: 514 GQASFSQFGGAAPFSSFVLPPRNQFGPSASNFPFGMVPP-----GMAIPMPSLGSLAPAK 568
Query: 289 H*GNPITGDGYKSM---NGQMNT 348
G+P T GY+ + G+M T
Sbjct: 569 MAGHPSTMQGYQGLMIPEGEMKT 591
>01_05_0551 + 23169751-23170491
Length = 246
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Frame = +1
Query: 73 DTPTRPRDTHSRLFGQAASNGPVSPLITDTIRS-NIQFGDSEMNGGSPTHSPAKMMNGSA 249
D T D S QAA+ V + D RS I GD+ P SP K +A
Sbjct: 67 DHRTTDDDDGSNGRDQAATLSDVDRFLFDNFRSLYIHDGDNHQQRRQPPPSPGKFTQPAA 126
Query: 250 YSTPSRGEREPAEH*GNPITGD 315
T S AE +GD
Sbjct: 127 AETSSSRSESVAEDARGTSSGD 148
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 31 SPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGS 210
SP++ R+R+V D + + RL A+ P+S TI + I+ D+E GGS
Sbjct: 573 SPRERAAERERMVLDIKVKLQGLWLRLLRLGATEDPLSSFEYGTILALIE-SDAEGIGGS 631
>09_06_0059 -
20584196-20584288,20584389-20585055,20585411-20585732,
20585862-20586000,20586261-20586322,20586371-20586434,
20586674-20586826,20586952-20587082,20587175-20587336,
20588060-20588264
Length = 665
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 124 ASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGERE 279
+++ P S T S I GD++ S TH + NG + TPS+ +RE
Sbjct: 406 STSSPFSLYNCRTASSTINAGDAQACSTSATHIDLENKNGDS-KTPSQDKRE 456
>04_01_0176 + 2003707-2004130,2004689-2004861
Length = 198
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = -3
Query: 266 RLGVE*ALPFIILAGECVGLPPFISE------SPNWM 174
+LG ALPFI+ G C L + E SP WM
Sbjct: 99 QLGCRQALPFIVPTGRCASLAAVVEEISGRRASPPWM 135
>02_01_0593 +
4408229-4408294,4408764-4409096,4409756-4409794,
4409870-4409937,4410024-4410068,4410478-4410655,
4410740-4410871,4410941-4411009,4411258-4411305,
4411498-4411545,4411654-4411763,4412044-4412125,
4412232-4412345
Length = 443
Score = 27.9 bits (59), Expect = 9.2
Identities = 28/94 (29%), Positives = 39/94 (41%)
Frame = +1
Query: 88 PRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSR 267
P + S +GQAASN +S DT + + EM GGS + +AY+ P R
Sbjct: 182 PAEAPSNAYGQAASN-LLSGSNLDTTINQLM----EMGGGSWDRDKVQRALRAAYNNPER 236
Query: 268 GEREPAEH*GNPITGDGYKSMNGQMNTMTSINGT 369
+ G PIT + GQ T + T
Sbjct: 237 AVE--YLYSGIPITAEVAVPAGGQGANTTEPSST 268
>01_05_0636 +
23852985-23853142,23853253-23853445,23853910-23854033,
23854285-23854637,23855525-23856530,23856892-23857085,
23857238-23857324
Length = 704
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1
Query: 145 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GN-PITGDGY 321
P+++ +++++ ++ GS H ++ S + R E GN I+ D
Sbjct: 435 PVVSRHLKADLSSHGHFISSGSDNHMVPVTLHASGLTKHKRSMDESHMLEGNNTISTDAG 494
Query: 322 KSMNGQMNTM-TSINGTSNIIYYNRVPPGGYSS 417
+ NG + S+NGTSN++ GG S
Sbjct: 495 TTTNGADHQRENSVNGTSNLVANPEHQQGGSHS 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,785,744
Number of Sequences: 37544
Number of extensions: 473050
Number of successful extensions: 1225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -