SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2190
         (754 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130432-1|AAI30433.1|  612|Homo sapiens otopetrin 1 protein.          32   2.5  
BC130430-1|AAI30431.1|  612|Homo sapiens otopetrin 1 protein.          32   2.5  
AF162278-1|AAF00199.1|  436|Homo sapiens Skn-1a/Epoc-1/Oct-11 PO...    31   3.4  
DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.    31   4.5  
AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.                31   4.5  
AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling fa...    31   4.5  
AK092208-1|BAC03829.1|  638|Homo sapiens protein ( Homo sapiens ...    31   4.5  
AJ245070-1|CAB44203.1|  127|Homo sapiens immunoglobulin gamma he...    31   4.5  
AJ245067-1|CAB44200.1|  127|Homo sapiens immunoglobulin gamma he...    31   4.5  
AB038782-1|BAB12116.1|  878|Homo sapiens intestinal mucin protein.     31   4.5  
AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.             31   4.5  
S53149-1|ABB72474.1|  391|Homo sapiens casein kinase II-alpha su...    31   5.9  
M55265-1|AAA35503.1|  391|Homo sapiens casein kinase II alpha su...    31   5.9  
J02853-1|AAA56821.1|  391|Homo sapiens casein kinase II alpha su...    31   5.9  
BT019792-1|AAV38595.1|  391|Homo sapiens casein kinase 2, alpha ...    31   5.9  
BC071827-1|AAH71827.1|  223|Homo sapiens synovial sarcoma, X bre...    31   5.9  
BC071167-1|AAH71167.1|  391|Homo sapiens casein kinase 2, alpha ...    31   5.9  
BC053532-1|AAH53532.1|  391|Homo sapiens casein kinase 2, alpha ...    31   5.9  
BC050036-1|AAH50036.1|  397|Homo sapiens CSNK2A1 protein protein.      31   5.9  
BC011668-1|AAH11668.1|  391|Homo sapiens casein kinase 2, alpha ...    31   5.9  
BC002818-1|AAH02818.1|  223|Homo sapiens synovial sarcoma, X bre...    31   5.9  
AL450023-16|CAI41157.1|  223|Homo sapiens synovial sarcoma, X br...    31   5.9  
AL450023-10|CAI41151.1|  223|Homo sapiens synovial sarcoma, X br...    31   5.9  
AL445236-9|CAI41623.1|  223|Homo sapiens synovial sarcoma, X bre...    31   5.9  
AL049761-3|CAB65624.1|  391|Homo sapiens casein kinase 2, alpha ...    31   5.9  
AL049761-2|CAM28336.1|  255|Homo sapiens casein kinase 2, alpha ...    31   5.9  
AF460298-1|AAM83313.1|   66|Homo sapiens immunoglobulin heavy ch...    30   7.8  

>BC130432-1|AAI30433.1|  612|Homo sapiens otopetrin 1 protein.
          Length = 612

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -3

Query: 170 LRMVSVINGETGPLLAACPKS 108
           LR+V+V NG T PL ++CPKS
Sbjct: 461 LRVVTVCNGNTMPLASSCPKS 481


>BC130430-1|AAI30431.1|  612|Homo sapiens otopetrin 1 protein.
          Length = 612

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -3

Query: 170 LRMVSVINGETGPLLAACPKS 108
           LR+V+V NG T PL ++CPKS
Sbjct: 461 LRVVTVCNGNTMPLASSCPKS 481


>AF162278-1|AAF00199.1|  436|Homo sapiens Skn-1a/Epoc-1/Oct-11 POU
           transcription factor protein.
          Length = 436

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +1

Query: 76  TPTRPRDTHSRLFGQAASNGPVS-PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAY 252
           TP +P D +SRL   + S GP+S P +  T+   +    S  N   P+ SP   ++ S+ 
Sbjct: 345 TPIKPPDYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPS-SPGSGLHASS- 402

Query: 253 STPSRGEREPAEH*GNPITGDG 318
            T S+   + A +  +     G
Sbjct: 403 PTASQNNSKAAVNSASSFNSSG 424


>DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.
          Length = 2881

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = +1

Query: 130 NGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GN--- 300
           NGP SP +T    SN Q   S  +  S   SP  ++  SA    +   +  ++  G+   
Sbjct: 253 NGP-SPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQTLSDFTGSNSF 311

Query: 301 -PITGDGYKSMNGQMNTMTSINGTSNIIYYNRVPPGGYSS 417
            P  G   +S    +N  TS+N  +  I ++  P G YS+
Sbjct: 312 SPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSN 351


>AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.
          Length = 2881

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = +1

Query: 130 NGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GN--- 300
           NGP SP +T    SN Q   S  +  S   SP  ++  SA    +   +  ++  G+   
Sbjct: 253 NGP-SPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQTLSDFTGSNSF 311

Query: 301 -PITGDGYKSMNGQMNTMTSINGTSNIIYYNRVPPGGYSS 417
            P  G   +S    +N  TS+N  +  I ++  P G YS+
Sbjct: 312 SPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSN 351


>AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling
           factor CHROM1 protein.
          Length = 2897

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = +1

Query: 130 NGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GN--- 300
           NGP SP +T    SN Q   S  +  S   SP  ++  SA    +   +  ++  G+   
Sbjct: 253 NGP-SPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQTLSDFTGSNSF 311

Query: 301 -PITGDGYKSMNGQMNTMTSINGTSNIIYYNRVPPGGYSS 417
            P  G   +S    +N  TS+N  +  I ++  P G YS+
Sbjct: 312 SPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSN 351


>AK092208-1|BAC03829.1|  638|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34889 fis, clone NT2NE2017397, weakly similar to
           Rattus norvegicus beta-catenin binding protein mRNA. ).
          Length = 638

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = +1

Query: 130 NGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GN--- 300
           NGP SP +T    SN Q   S  +  S   SP  ++  SA    +   +  ++  G+   
Sbjct: 253 NGP-SPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQTLSDFTGSNSF 311

Query: 301 -PITGDGYKSMNGQMNTMTSINGTSNIIYYNRVPPGGYSS 417
            P  G   +S    +N  TS+N  +  I ++  P G YS+
Sbjct: 312 SPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSN 351


>AJ245070-1|CAB44203.1|  127|Homo sapiens immunoglobulin gamma heavy
           chain variable region protein.
          Length = 127

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 298 NPITGDGYKSMNGQMNTMTSINGTSNIIYYNRVPPGGYSSGLW 426
           N IT     S N    TMTS+      +YY    PG ++ G W
Sbjct: 67  NRITISADTSKNEISLTMTSVTAADTAVYYCATEPGRFAGGNW 109


>AJ245067-1|CAB44200.1|  127|Homo sapiens immunoglobulin gamma heavy
           chain variable region protein.
          Length = 127

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 298 NPITGDGYKSMNGQMNTMTSINGTSNIIYYNRVPPGGYSSGLW 426
           N IT     S N    TMTS+      +YY    PG ++ G W
Sbjct: 67  NRITISADTSKNEISLTMTSVTAADTAVYYCATEPGRFAGGNW 109


>AB038782-1|BAB12116.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 260 PAEVRGSQPNTKATQSPVTDTSR*TGK*TQ*RQLMAPATLSTTTAC 397
           P   R S+     TQ+P T TSR T + T   Q+   +TL+TT  C
Sbjct: 468 PPTTRTSETPVATTQTPTTLTSRRTTRITS--QMTTQSTLTTTAGC 511


>AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.
          Length = 2759

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = +1

Query: 130 NGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GN--- 300
           NGP SP +T    SN Q   S  +  S   SP  ++  SA    +   +  ++  G+   
Sbjct: 130 NGP-SPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASNHTNQTLSDFTGSNSF 188

Query: 301 -PITGDGYKSMNGQMNTMTSINGTSNIIYYNRVPPGGYSS 417
            P  G   +S    +N  TS+N  +  I ++  P G YS+
Sbjct: 189 SPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSN 228


>S53149-1|ABB72474.1|  391|Homo sapiens casein kinase II-alpha
           subunit protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>M55265-1|AAA35503.1|  391|Homo sapiens casein kinase II alpha
           subunit protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>J02853-1|AAA56821.1|  391|Homo sapiens casein kinase II alpha
           subunit protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>BT019792-1|AAV38595.1|  391|Homo sapiens casein kinase 2, alpha 1
           polypeptide protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>BC071827-1|AAH71827.1|  223|Homo sapiens synovial sarcoma, X
           breakpoint 2 protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
 Frame = +1

Query: 85  RPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 264
           RP+ T  RL G +    P  P         +       N G     P K          S
Sbjct: 96  RPQMTFGRLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERS 155

Query: 265 RGEREPAEH*GNPITGDGYKSMN----GQMNTMTS---INGTSNIIYYNRVPPGGYSSG 420
            G RE  E      T   + S N    G+ +  TS   ++GT   I +NR P GG   G
Sbjct: 156 -GNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPG 213


>BC071167-1|AAH71167.1|  391|Homo sapiens casein kinase 2, alpha 1
           polypeptide protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>BC053532-1|AAH53532.1|  391|Homo sapiens casein kinase 2, alpha 1
           polypeptide protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>BC050036-1|AAH50036.1|  397|Homo sapiens CSNK2A1 protein protein.
          Length = 397

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>BC011668-1|AAH11668.1|  391|Homo sapiens casein kinase 2, alpha 1
           polypeptide protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>BC002818-1|AAH02818.1|  223|Homo sapiens synovial sarcoma, X
           breakpoint 2 protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
 Frame = +1

Query: 85  RPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 264
           RP+ T  RL G +    P  P         +       N G     P K          S
Sbjct: 96  RPQMTFGRLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERS 155

Query: 265 RGEREPAEH*GNPITGDGYKSMN----GQMNTMTS---INGTSNIIYYNRVPPGGYSSG 420
            G RE  E      T   + S N    G+ +  TS   ++GT   I +NR P GG   G
Sbjct: 156 -GNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPG 213


>AL450023-16|CAI41157.1|  223|Homo sapiens synovial sarcoma, X
           breakpoint 2B protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
 Frame = +1

Query: 85  RPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 264
           RP+ T  RL G +    P  P         +       N G     P K          S
Sbjct: 96  RPQMTFGRLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERS 155

Query: 265 RGEREPAEH*GNPITGDGYKSMN----GQMNTMTS---INGTSNIIYYNRVPPGGYSSG 420
            G RE  E      T   + S N    G+ +  TS   ++GT   I +NR P GG   G
Sbjct: 156 -GNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPG 213


>AL450023-10|CAI41151.1|  223|Homo sapiens synovial sarcoma, X
           breakpoint 2 protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
 Frame = +1

Query: 85  RPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 264
           RP+ T  RL G +    P  P         +       N G     P K          S
Sbjct: 96  RPQMTFGRLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERS 155

Query: 265 RGEREPAEH*GNPITGDGYKSMN----GQMNTMTS---INGTSNIIYYNRVPPGGYSSG 420
            G RE  E      T   + S N    G+ +  TS   ++GT   I +NR P GG   G
Sbjct: 156 -GNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPG 213


>AL445236-9|CAI41623.1|  223|Homo sapiens synovial sarcoma, X
           breakpoint 2B protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
 Frame = +1

Query: 85  RPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 264
           RP+ T  RL G +    P  P         +       N G     P K          S
Sbjct: 96  RPQMTFGRLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERS 155

Query: 265 RGEREPAEH*GNPITGDGYKSMN----GQMNTMTS---INGTSNIIYYNRVPPGGYSSG 420
            G RE  E      T   + S N    G+ +  TS   ++GT   I +NR P GG   G
Sbjct: 156 -GNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPG 213


>AL049761-3|CAB65624.1|  391|Homo sapiens casein kinase 2, alpha 1
           polypeptide protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 308 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362


>AL049761-2|CAM28336.1|  255|Homo sapiens casein kinase 2, alpha 1
           polypeptide protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 264
           D  SRL  + A      P     ++   + G S M GGS   S A MM+G S+  TPS
Sbjct: 172 DHQSRLTAREAME---HPYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 226


>AF460298-1|AAM83313.1|   66|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 66

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 325 SMNGQMNTMTSINGTSNIIYY-NRVPPGGYSSG 420
           S N  + TMT+++      YY  R+PPG YSSG
Sbjct: 25  SKNQVVLTMTNMDPVDTATYYCARIPPGPYSSG 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,761,844
Number of Sequences: 237096
Number of extensions: 2557226
Number of successful extensions: 11874
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11874
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -