Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2190
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear recep...    29   4.7  
AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear recep...    29   4.7  
AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear recep...    29   4.7  
AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear recep...    29   4.7  
AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear horm...    29   4.7  
AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear horm...    29   4.7  
AC006730-9|AAO91686.1|  330|Caenorhabditis elegans Serpentine re...    28   8.2  

>AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 297 QPNHR*RIQVDERANEHNDVN*WHQQHYLLQPRAARRLFIWTLVDY 434
           QP+ R +I  D R   H+D + WH++ + L    A+   ++  +DY
Sbjct: 195 QPSERHQI-FDLRFVNHDDYHYWHERDWFLLTEYAKTFDVFEALDY 239


>AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 297 QPNHR*RIQVDERANEHNDVN*WHQQHYLLQPRAARRLFIWTLVDY 434
           QP+ R +I  D R   H+D + WH++ + L    A+   ++  +DY
Sbjct: 186 QPSERHQI-FDLRFVNHDDYHYWHERDWFLLTEYAKTFDVFEALDY 230


>AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 297 QPNHR*RIQVDERANEHNDVN*WHQQHYLLQPRAARRLFIWTLVDY 434
           QP+ R +I  D R   H+D + WH++ + L    A+   ++  +DY
Sbjct: 195 QPSERHQI-FDLRFVNHDDYHYWHERDWFLLTEYAKTFDVFEALDY 239


>AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear receptor
           protein protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 297 QPNHR*RIQVDERANEHNDVN*WHQQHYLLQPRAARRLFIWTLVDY 434
           QP+ R +I  D R   H+D + WH++ + L    A+   ++  +DY
Sbjct: 195 QPSERHQI-FDLRFVNHDDYHYWHERDWFLLTEYAKTFDVFEALDY 239


>AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform b protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 297 QPNHR*RIQVDERANEHNDVN*WHQQHYLLQPRAARRLFIWTLVDY 434
           QP+ R +I  D R   H+D + WH++ + L    A+   ++  +DY
Sbjct: 195 QPSERHQI-FDLRFVNHDDYHYWHERDWFLLTEYAKTFDVFEALDY 239


>AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform a protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 297 QPNHR*RIQVDERANEHNDVN*WHQQHYLLQPRAARRLFIWTLVDY 434
           QP+ R +I  D R   H+D + WH++ + L    A+   ++  +DY
Sbjct: 195 QPSERHQI-FDLRFVNHDDYHYWHERDWFLLTEYAKTFDVFEALDY 239


>AC006730-9|AAO91686.1|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein78 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -3

Query: 353 VIVFICPFIDLYPSPVIGLP*CSAGSLSPRLG-VE*ALPFIILAGECVGLPPFISESPNW 177
           +I+F+  F+ +Y   V+G+  CS  + + ++  VE  LP  + + +   LP F     N 
Sbjct: 131 LIIFLVGFLAVYTFSVVGMYFCSGITENEKIKFVEENLPEYLSSFQ--SLPNFSIYQANA 188

Query: 176 MLLRMVSVINGETGPLLA 123
           +L   + VI   TG LLA
Sbjct: 189 LL--FIMVITAVTGGLLA 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,546,145
Number of Sequences: 27780
Number of extensions: 393116
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)