Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2189
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 118 9e-28
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 118 1e-27
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 100 2e-22
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 88 1e-18
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 61 2e-10
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 56 7e-09
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 53 4e-08
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 51 2e-07
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 49 8e-07
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 49 8e-07
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 46 4e-06
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 46 4e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 46 6e-06
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 39 7e-04
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 37 0.003
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 36 0.005
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 36 0.006
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 36 0.006
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 36 0.008
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 33 0.033
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 32 0.076
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 32 0.100
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 3.8
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 3.8
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 27 3.8
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 26 6.6
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 6.6
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 6.6
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.6
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 6.6
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 8.7
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 118 bits (284), Expect = 9e-28
Identities = 55/171 (32%), Positives = 97/171 (56%)
Frame = +1
Query: 79 KSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKVWDI 258
+SLF K EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ VWD+
Sbjct: 10 QSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYRNISFTVWDV 68
Query: 259 GGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKR 438
GGQ + R +W Y + I+++VD+ D ++I + EL +L + +L +LV NK+
Sbjct: 69 GGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQ 128
Query: 439 DLPQALDEHGLIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIAHSKS 591
DLP A++ + +++ L +++ R+ + D + L+WL + K+
Sbjct: 129 DLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 118 bits (283), Expect = 1e-27
Identities = 59/168 (35%), Positives = 94/168 (55%)
Frame = +1
Query: 85 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKVWDIGG 264
LF +EM + ++GL +GKTT + + Q S IPTVGFN+ VT N+ VWD+GG
Sbjct: 16 LFSNKEMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVGFNVETVTYKNIKFNVWDVGG 74
Query: 265 QPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 444
Q + R +W Y G ++++VD+AD ++I +R ELH ++ +++ +LVL NK+DL
Sbjct: 75 QDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDL 134
Query: 445 PQALDEHGLIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIAHSK 588
P AL + + + L ++DR D + L WL ++K
Sbjct: 135 PGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 100 bits (240), Expect = 2e-22
Identities = 51/160 (31%), Positives = 86/160 (53%)
Frame = +1
Query: 94 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKVWDIGGQPR 273
+ E+ + L+GL +GKTT + + + +E + PT GF +R + + +WDIGGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTILKCLLNEDVNE-VSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 274 FRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDLPQA 453
R+ W+ Y AI+++VD+ D ++E RN L LL +++L +LVL NK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 454 LDEHGLIERMNLSAIQDREICCYSISCKEKDNIDITLQWL 573
L + + +N+S + +S+S NI + WL
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWL 172
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 88.2 bits (209), Expect = 1e-18
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Frame = +1
Query: 52 LINRILDWIKSL-FWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTK 228
+IN D + L + ++ +GL +GKTT ++++ + + + M PT+ ++
Sbjct: 3 IINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAV-MQPTLHPTSEELAI 61
Query: 229 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTG 408
GNV +D+GG + R +W Y VN IVY+VD D +++ S+ EL +LL ++L
Sbjct: 62 GNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELAR 121
Query: 409 IPVLVLGNKRDLPQALDEHGLIERMNL 489
+P L+LGNK D P A+ E L + L
Sbjct: 122 VPFLILGNKIDAPGAISEDELKAALGL 148
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 60.9 bits (141), Expect = 2e-10
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +1
Query: 106 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--VWDIGGQPR 273
+L L+G GK+ + A ++E I T+G F +R T+K +WD GQ R
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 274 FRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 444
FR++ Y RG + I+ + D D D + L +++ + G+ L++GNK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 55.6 bits (128), Expect = 7e-09
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Frame = +1
Query: 94 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKVWDIG 261
K +++ ++G GKT+ +N + +FS+D T+G F ++V + VT+++WD
Sbjct: 6 KHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTA 65
Query: 262 GQPRFRSMWERYCRGVNAIVYMVDAADP---DKIEASRNELHSLLEKQQLTGIPVLVLGN 432
GQ RF+S+ + RG + V + D + + +++ R+E P ++LGN
Sbjct: 66 GQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGN 125
Query: 433 KRDLPQALDEHGLIERMNLSAIQDR-EICCYSISCKEKDNI 552
K D+ + + + + L+ Q R EI + S KE N+
Sbjct: 126 KVDVEE--QKRMVSKSKALAFCQARGEIPYFETSAKEAINV 164
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 53.2 bits (122), Expect = 4e-08
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +1
Query: 103 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKVWDIGGQP 270
+++ ++G GKT+ + G F E+ T+G N + T +T +WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 271 RFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRD 441
F +M C AI++M D + + S E + T +P+L+ G K D
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLN-SIKEWYRQARGFNKTAVPILI-GTKYD 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Frame = +1
Query: 103 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--VWDIGGQP 270
++L L+G GK+ + + F+ I T+G F +R + IK +WD GQ
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 271 RFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRD 441
RFR++ Y RG I+ + D D + R S +E+ + +++GNK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT-WFSNVEQHASENVYKILIGNKCD 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 48.8 bits (111), Expect = 8e-07
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Frame = +1
Query: 103 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGN----VTIKVWDI 258
+++ L G +GK+ + Q+ + + TVG + V GN + +++WD
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 259 GGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKR 438
GQ +FRS+ Y RG V + D + D E + L + T I V++ G+K
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPST-ICVVLAGSKS 128
Query: 439 DL 444
DL
Sbjct: 129 DL 130
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 48.8 bits (111), Expect = 8e-07
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Frame = +1
Query: 103 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKVWDIGGQP 270
+++ ++G GKT +N + +FS + T+G F + V + VT+++WD GQ
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 271 RFRSMWERYCRGVN--AIVYMVDAADP-DKIEASRNELHSLLEKQQLTGIPVLVLGNKRD 441
RF+S+ + RG + IVY V+ + D +E R E Q P +++GN+ D
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEF-LYQTSQDECAFPFIIVGNQID 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 46.4 bits (105), Expect = 4e-06
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Frame = +1
Query: 88 FWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTK----GNVTIKVWD 255
F + +L +G Q GKT+ + QF T+G + T V +++WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 256 IGGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNK 435
GQ RFRS+ Y R + + + D + + + + + ++ + ++++GNK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIED-VRAERGDDVIIVLVGNK 125
Query: 436 RDL 444
DL
Sbjct: 126 TDL 128
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 46.4 bits (105), Expect = 4e-06
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Frame = +1
Query: 106 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV----TKGNVTIKVWDIGGQPR 273
+L LVG +GKTTFV +G+F + I T+G + + G + VWD GQ +
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 274 FRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDLPQA 453
+ + Y + M D + + L+ + IP+++ GNK D+ +
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV--RVCENIPIVLCGNKVDVKER 128
Query: 454 LDEHGLIERMNLSAIQDREICCYSISCKEKDNIDITLQWL 573
++ ++ + + + Y IS K N + WL
Sbjct: 129 -----KVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWL 163
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 46.0 bits (104), Expect = 6e-06
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Frame = +1
Query: 115 LVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--VWDIGGQPRFRS 282
L+G GK+ + +F+ + T+G F R + N IK +WD GQ R+R+
Sbjct: 15 LIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRA 74
Query: 283 MWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 444
+ Y RG + + D + L L E + I ++++GNK DL
Sbjct: 75 ITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD-SNIVIMLVGNKTDL 127
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 39.1 bits (87), Expect = 7e-04
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Frame = +1
Query: 106 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM---RKVTKGNVTIKVWDIGGQPRF 276
+L +VG GKT+ ++V G F + +PTV N +V +V + +WD GQ +
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 277 RSMWERYCRGVNAIVYMVDAADPDKIE-ASRNELHSLLEKQQLTGIPVLVLGNKRDL--- 444
+ + I+ PD +E S + + +P +++G K DL
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI--NTLCPNVPFILVGMKADLRSD 127
Query: 445 PQALDE 462
P A++E
Sbjct: 128 PVAIEE 133
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.1 bits (82), Expect = 0.003
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Frame = +1
Query: 100 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK---VTKGNVTIKVWDIGGQP 270
E +L +VG GK+ + F ++ PT+ + RK + + V D GQ
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
Query: 271 RFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 444
+ +M E+Y R + + + + +L + PV+++ NK DL
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDL 125
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 196 TVGFNMRKVTKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADPDK--IEASRN 369
T+G + T ++ I+++D+GGQ R W VN+I++ V D DK E +
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 370 ELHSLLEKQQL 402
E + L+E L
Sbjct: 239 ERNRLVESISL 249
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 35.9 bits (79), Expect = 0.006
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = +1
Query: 106 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM---RKVTKGNVTIKVWDIGGQPRF 276
+L +VG GKT + V + G F E +PTV N +V +V + +WD GQ +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 277 RSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL---P 447
+ + I+ PD ++ + + S + + +P+L++ K DL P
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV-LHFCSSLPILLVACKADLRNDP 126
Query: 448 QALDE 462
+ ++E
Sbjct: 127 KIIEE 131
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Frame = +1
Query: 109 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN-VTIKVWDIGGQPRFR 279
+ ++G + GK++ F E PT+ F+ KG ++ D GQ +
Sbjct: 9 IAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYS 68
Query: 280 SMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 444
+ ++ G++ V + E + +L +P++V+GNK DL
Sbjct: 69 ILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDL 123
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.5 bits (78), Expect = 0.008
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Frame = +1
Query: 106 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM---RKVTKGNVTIKVWDIGGQPRF 276
+L +VG GKT + V + G F E +PTV N +V ++ + +WD GQ +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 277 RSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL---P 447
+ + ++ P+ ++ + + S + + +P+L++G K DL P
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV-LHFCSNLPILLVGCKVDLRNDP 126
Query: 448 QALDE 462
+ ++E
Sbjct: 127 KTIEE 131
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 33.5 bits (73), Expect = 0.033
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 106 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFN-MRKVTKGN----VTIKVWDIGGQP 270
+L +VG GKT + V +SG F E +PTV N + +T G + + +WD GQ
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 271 RF 276
+
Sbjct: 76 EY 77
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 32.3 bits (70), Expect = 0.076
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Frame = +1
Query: 106 ELTLVGLQYSGKTTFVNVIASGQFSED---MIPTVGFNMRKVT-KGNVTIKVWDIGGQPR 273
++ L+G SGK++ +++ S ++D + T+ V GN+ + +WD GGQ
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEA 63
Query: 274 FRSMW-----ERYCRGVNAIVYMVD 333
F + + R V ++Y+ D
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFD 88
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 31.9 bits (69), Expect = 0.100
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 106 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK---VTKGNVTIKVWDIGGQPRF 276
++ ++G +GKT+ +NV G F + PT+ N V ++ + +WD GQ +
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Frame = +1
Query: 103 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMR-KVTKGN--VTIKVWDIGGQPR 273
++ +VG GKT + + +F D +PTV N V G+ T+ ++D GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQED 63
Query: 274 FRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 444
+ + + + P E + + + G+P L++G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVH-HHCPGVPCLIVGTQIDL 119
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 355 EASRNELHSLLEKQQLTGIPVLVLGNKRDLPQALDEHGLI 474
E E H L G P LGN+ + Q LDE+GL+
Sbjct: 256 ENEGTEPHDNLTFMTDLGTPYYSLGNEFERKQILDEYGLL 295
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = -2
Query: 567 LESYVDVIFLLARYGITANLAVLDR*QVHSLNESVFVESLRQIALVAEHQHGDAGELLLL 388
++ +V+ + L+ G + AVL V N F E+ + + + ++ + L
Sbjct: 294 IDPFVEAMNLIKNGGSISKAAVLLEQSVKE-NPQHF-EAWKWLGRIHTLLGNESRVVEAL 351
Query: 387 QQAVKLVTRRLDLIRVGRVDHVHNSIDPSAITLPH*TESWLATNIP 250
+AVKL + LDL+ V +V+ S++ A+ E W+ + P
Sbjct: 352 LEAVKLDSTNLDLMMDLAVSYVNQSLNVQALVC---LEDWIVNSFP 394
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 442 LPQALDEHGLIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIAHSKSGSAH*LGTDY 621
L QA+ E + ++ +SA + + + + KE+ I LQW++ KS S L
Sbjct: 165 LKQAIAEISPLMKL-VSAKRFNKSVEFPMPLKERQRRRIALQWILGECKSSSPKRLSDRI 223
Query: 622 ISKIL 636
+ +I+
Sbjct: 224 VKEII 228
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 427 GNKRDLPQALDEHGLIERMNLSAI 498
G ++ LP+ +D HG++ M+ SA+
Sbjct: 10 GAEKYLPREIDNHGIVGNMHTSAM 33
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 574 SATGELCRCYLSPCTIW 524
+A LCRCY+ C+ W
Sbjct: 2319 TAPENLCRCYVGWCSFW 2335
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 133 SGKTTFVNVIASGQFSEDMIPTVG 204
SGK TF+N + S SE +P +G
Sbjct: 111 SGKNTFINGLQSYLISETALPELG 134
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 702 PIIKVIKQSLVAINSIYAWLIQQNLANVIRTELMRA-TRLTVRDQPLESYVDVIFLLARY 526
PI+++IKQ+ I S L+ Q+L + R EL+ L+ + L+S + I + +
Sbjct: 159 PILELIKQNNFCIPSPCRKLVWQSLVSAERNELLTLYATLSTTNNSLDSSIRKIIRMQSF 218
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 34 SFKMLALINRILDWIKSLFWKE 99
SFK+ A++ LDW+++L +K+
Sbjct: 180 SFKLKAVLRGHLDWVRTLSFKK 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,900
Number of Sequences: 5004
Number of extensions: 55157
Number of successful extensions: 208
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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