Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2187
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 95 4e-21
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 0.55
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 0.55
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 28 0.72
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 2.9
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 3.9
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 5.1
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 5.1
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 5.1
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 24 8.9
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 24 8.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 8.9
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 24 8.9
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 95.1 bits (226), Expect = 4e-21
Identities = 48/118 (40%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +1
Query: 85 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 264
+H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + +
Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83
Query: 265 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDK 435
+ A PE+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G+K
Sbjct: 84 KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEK 140
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 0.55
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 402 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 268
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 0.55
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 402 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 268
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 0.72
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +1
Query: 283 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVIC 423
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LIC 120
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 316 AMTSDRGLCGAVHTGVSKVIRNRLSE 393
A+ SD +C V TG+S ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 139 KSVKNIQKITQSMKMVSAAKYTRAERDLK 225
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 100 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 222
+N KAI I K VKNI T ++++ RA + L
Sbjct: 1071 KNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 5.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 289 EDDPKQLFVAMTSDRGLCGAVHT--GVS 366
+ +P L VA+ SDR CG+++ GVS
Sbjct: 876 KQNPYDLLVALDSDRKACGSLYVDDGVS 903
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 5.1
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 25 ICKMLGRFGPGVGTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 201
+ LG F VG A V P N+A + +R K+V ++ K+ + +Y
Sbjct: 69 LADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQY 127
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 395 GSLRRLRITLDTPVCTAPHKPLSEV 321
G L + R+T+DTP+ T P S++
Sbjct: 23 GVLLKERVTMDTPLLTEDGFPRSDI 47
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/22 (40%), Positives = 19/22 (86%)
Frame = +1
Query: 115 LKAISIRLKSVKNIQKITQSMK 180
L+AIS+RL++++ +++ QSM+
Sbjct: 86 LQAISLRLQTMRTSEQMMQSMR 107
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.2 bits (50), Expect = 8.9
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 112 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 252
T + IS RL +NI+++ Q + + +A + A+R K +P +GA
Sbjct: 549 TDQIISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDLDGA 595
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 24.2 bits (50), Expect = 8.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 106 YSCLADGKPPPRLGCRHPVRSV-PTFCKFY 20
Y+ A+G PP GC HP+ V F KF+
Sbjct: 209 YNFAAEGIPPAG-GCLHPLMKVREEFRKFF 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,936
Number of Sequences: 5004
Number of extensions: 41187
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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