Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2187
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    63   8e-11
07_03_0571 - 19602755-19603831                                         61   3e-10
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    29   1.6  
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274...    27   5.0  
03_05_0287 + 22759946-22760836                                         27   5.0  
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879...    27   6.6  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 63.3 bits (147), Expect = 8e-11
 Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
 Frame = +1

Query: 118 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 297
           +A+  R+KSV+NIQKIT++MKMV+A+K    +   + +R   +    F       P  D 
Sbjct: 60  RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116

Query: 298 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDK 435
            K + VA+TSD+GLCG +++    VSK +    S P  E+ K + +G+K
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEK 164


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
 Frame = +1

Query: 112 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 288
           +L+ +  R+ SV+N QKIT++MK+V+AAK  RA+  + ++RP+ E  V+  Y   +    
Sbjct: 37  SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96

Query: 289 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 432
           ED            K   V +T +RGLCG+ +  V K    R+ E     ++  V+ VG 
Sbjct: 97  EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156

Query: 433 K 435
           K
Sbjct: 157 K 157


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 395 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 270
           GSL+R R++        PH   S  I     + C+GSS  G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381


>05_06_0223 -
           26525618-26526112,26526203-26526370,26526649-26527473,
           26527898-26528004,26529701-26529767
          Length = 553

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
 Frame = -2

Query: 420 DHLDVLSTRFAETVADHF---------GYTSVYSSAQTSVR---GHSNKQLLGV-IFGRC 280
           D+L ++S   A  V D F          + SV     T++R   GH +++L  V I G C
Sbjct: 369 DYLSLVSVLHASPVLDTFILSVQQGGMKHDSVSGDTTTNLRTMPGHKHERLKEVMIIGFC 428

Query: 279 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGL 169
           + +  +EL C     T+S + T++       H L  +
Sbjct: 429 SATSMVELTCHILENTTSLE-TITLDAVCDVHDLENI 464


>03_05_0287 + 22759946-22760836
          Length = 296

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 205 RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGL 339
           R+  DLK   P+  G  +  ERA +   ++DP  +FV    D G+
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGV 267


>03_05_0223 - 22087076-22087340,22087448-22087726,22087808-22087950,
            22088029-22088133,22088272-22088465,22088561-22088753,
            22088893-22089202,22089335-22089558,22089862-22089990,
            22090019-22090078,22090426-22090617,22091463-22091522,
            22091606-22091688,22092473-22092611,22092949-22093083,
            22093187-22093462
          Length = 928

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +1

Query: 88   HQPNRNMATLKAISIRLKSVKN--IQKITQSMKMVSAAK-YTRAERDLKAARPYGEGAVQ 258
            + P+R  A +K +  RLKS K   ++++ +    +SA K   R +++ + A  YG+ A+ 
Sbjct: 848  YDPDRERAQMKKMKKRLKSEKKGAMRELRKDNYFLSAVKEKERIKQEQERAEKYGK-AMA 906

Query: 259  FYERAE 276
            F +  E
Sbjct: 907  FLQEQE 912


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,050
Number of Sequences: 37544
Number of extensions: 301890
Number of successful extensions: 865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)