Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2187
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 129 1e-30
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 129 1e-30
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 129 1e-30
AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical ... 30 0.64
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 29 1.1
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 29 1.1
Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical pr... 28 3.4
U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical pr... 28 3.4
U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 27 7.9
U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical p... 27 7.9
U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical pr... 27 7.9
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 27 7.9
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 27 7.9
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 129 bits (311), Expect = 1e-30
Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 4/117 (3%)
Frame = +1
Query: 100 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 270
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 271 -AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKS 438
E ++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKS
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKS 139
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 129 bits (311), Expect = 1e-30
Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 4/117 (3%)
Frame = +1
Query: 100 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 270
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 271 -AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKS 438
E ++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKS
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKS 139
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 129 bits (311), Expect = 1e-30
Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 4/117 (3%)
Frame = +1
Query: 100 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 270
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 271 -AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKS 438
E ++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKS
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKS 139
>AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical
protein K09H9.2 protein.
Length = 443
Score = 30.3 bits (65), Expect = 0.64
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 220 LKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR 378
L RP+ + + + E +P DP F+ ++ D + GA G S IR
Sbjct: 63 LSKNRPFDQAMNKTMTKMEFSPDYSDPSSEFMLLSVDESVIGAFSEGQSLTIR 115
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 390 AETVADHFGYTSVY-SSAQTSVRGHSNK 310
+E + D+FG+T V+ +SA T V HSNK
Sbjct: 111 SEILFDYFGFTEVHKTSASTLVAKHSNK 138
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 390 AETVADHFGYTSVY-SSAQTSVRGHSNK 310
+E + D+FG+T V+ +SA T V HSNK
Sbjct: 111 SEILFDYFGFTEVHKTSASTLVAKHSNK 138
>Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical
protein T01B7.6 protein.
Length = 765
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -3
Query: 437 DLSPTQITLMFSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 264
D T M + G LR + TPV +PL +N LGSS G ++S S
Sbjct: 544 DFKMTSSIPMTNGLGHLRLGSVWSGTPVEAKQEEPLHYFQQQDNFLGSSFGPISSTFS 601
>U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical
protein C10G6.1b protein.
Length = 569
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 295 DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAEN 408
+PK+L + +RGL VS +++NRL+E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266
>U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical
protein C10G6.1a protein.
Length = 574
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 295 DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAEN 408
+PK+L + +RGL VS +++NRL+E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 279 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGLCD 163
N+ PF+ CTF G S Q LS HL LCD
Sbjct: 189 NVCPFVPYGCTFAGGKESIQQHLSD---EPVRHLMYLCD 224
>U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical
protein D2092.1a protein.
Length = 804
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 73 VAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 213
V + PN L + I LKS++N QK +K K + E
Sbjct: 509 VTIYDEDPNNRFEFLGRVQIPLKSIRNCQKRWYGLKDEKLRKRVKGE 555
>U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical
protein D2092.1b protein.
Length = 890
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 73 VAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 213
V + PN L + I LKS++N QK +K K + E
Sbjct: 595 VTIYDEDPNNRFEFLGRVQIPLKSIRNCQKRWYGLKDEKLRKRVKGE 641
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 232 RPYGEGAVQFYERAEVTPP 288
RP+GEGA + E A+VT P
Sbjct: 1366 RPFGEGAERRTEEADVTTP 1384
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 279 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGLCD 163
N+ PF+ CTF G S Q LS HL LCD
Sbjct: 189 NVCPFVPYGCTFAGGKESIQQHLSD---EPVRHLMYLCD 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,128
Number of Sequences: 27780
Number of extensions: 244410
Number of successful extensions: 652
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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