Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2187
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 45  LRTGCRHPSRGGGLPSAKQ 101
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 45  LRTGCRHPSRGGGLPSAKQ 101
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
          protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 2  FYRLTPIKFAKCWDASDRVSAPKSWRWFTI 91
          F    P+K  +    S R SA    RWF I
Sbjct: 5  FVAFLPVKSFRESRCSVRCSAASGLRWFEI 34


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 364 SKVIRNRLSEPGAEN 408
           SK+ R+ LS+PG+ N
Sbjct: 148 SKIGRDELSQPGSLN 162


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 123 GLQSSHIPVWLMVNH 79
           G   +++P W+M NH
Sbjct: 346 GTPQNNVPNWVMGNH 360


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 63  HPSRGGGLPSAKQEYGYFEGHFHP 134
           +PS  G LP +   + +    +HP
Sbjct: 305 YPSTAGFLPPSYHPHQHHPSQYHP 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,375
Number of Sequences: 438
Number of extensions: 2991
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)