Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2186
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    29   0.052
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   6.0  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   6.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   7.9  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 285 SSNAFRFEGWGSRCNYTETLQLISQGGWRIYVVDVY-GLQKPLNTRWAVRSSPH-ISNK 115
           + N+ ++ G      Y E ++L  +GGW++   D           +W    SP  ISNK
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKVVWDDTQKNTHMYKGDQWVAFDSPKAISNK 342


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 350 SDYAKYNFAGFNFIKRCYSFTVEVNREHLLST*FIRKIGTRLKF 481
           SDY   + A F+F+ R     + +   HL     I K  ++ ++
Sbjct: 413 SDYQNKSLAAFDFVARNSDTPIILWTSHLTQADVIEKYLSKARY 456


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 563 KHISDSRRGLRDKTSVRCIRVKR 495
           K   D+RR   D+ ++RC  ++R
Sbjct: 150 KRSRDARRAKEDEIAIRCAFLER 172


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 163 WFLEPIDIYNVNAP 204
           +F +P+D+YN   P
Sbjct: 264 FFRQPLDLYNFRVP 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,182
Number of Sequences: 336
Number of extensions: 4238
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)