Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2186
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   2.8  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    27   3.7  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    25   8.6  

>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 342 LPPVITQSIILRVSILLNDVIPSPWKSIVN 431
           LPPV + S   R ++ LN +I  P+KS+++
Sbjct: 347 LPPVPSNSSSQRSNVSLNSLIECPYKSMMS 376


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 641 GEIVFYETRCLK*RER-----ESENILYCTPKHISDSRRGLRDKTSVRCIRVKRCTGVRI 477
           G+I F++   L   ER     ++ ++L C P +ISD     +   SVR    K     + 
Sbjct: 171 GKINFHQIDVLNEHERVESLLQTSHVLLCNPPYISDDDFAAQTDISVRKYEPKLALLAK- 229

Query: 476 SGGYQFF 456
           +GG +F+
Sbjct: 230 NGGNEFY 236


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 530 LLGHDDYLKCVLV 568
           L+GH DY+KC+L+
Sbjct: 128 LIGHTDYVKCLLL 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,962
Number of Sequences: 5004
Number of extensions: 65068
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)