Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2186
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636     29   3.9  
06_02_0193 - 12874300-12874863                                         28   6.8  
08_02_1461 - 27299891-27301870                                         28   9.0  

>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
          Length = 950

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -3

Query: 282 SNAFRFEGWGSRCNYTETLQLI----SQGGWRIYVVDVYGLQKPLNTRWAVRSSPHISN 118
           S+AF   G GSR   T T+Q +    S G   +Y ++  G +      ++V  SP + N
Sbjct: 242 SSAFENNGTGSRILLTTTIQSVTNRCSHGNGYVYQMNTLGKEDSEELAFSVLRSPELEN 300


>06_02_0193 - 12874300-12874863
          Length = 187

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 37 HDNASRTLWRIGLYYDFV 90
          H N+S++LWR+ L+Y ++
Sbjct: 9  HSNSSQSLWRLSLFYPYL 26


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 257 HPSNRNALLLHGRNRQGGGTYPRGLTRGPTTS 352
           H ++    LL GR R GGG + RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,296,001
Number of Sequences: 37544
Number of extensions: 439715
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)