Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2186
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           30   2.3  
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 29   5.3  

>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 724 NAICVVVIRCYECDRIECDCRCL 656
           N  C V  RC  C    CDC CL
Sbjct: 223 NLCCCVTCRCSVCTCCPCDCTCL 245


>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 724 NAICVVVIRCYECDRIECDCRCL 656
           N  C V  RC  C    CDC CL
Sbjct: 223 NLCCCVTCRCSVCTCCPCDCPCL 245


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 514 GAFVLSDAPVFEFQAGTNFSNELRTQQMFTIDFHGEGITSFNKIE 380
           G  +L+  PV +FQ+     N L+  + F  D  G  +   NK+E
Sbjct: 241 GVDLLASQPVEKFQSSDGAQNSLKEIENFLKDRQGISLKKLNKLE 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,797,146
Number of Sequences: 59808
Number of extensions: 514730
Number of successful extensions: 1152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)