Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2185
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.7  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   6.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.4  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 226  DGSAMGVIVTRASMLAHCRMLSVACNYTEGEHMVCVLDFKRETGLWHAVLASVLNGMHVI 405
            DGS +    + +S+LA C          E + ++  ++F    GL H  L  V  G+  +
Sbjct: 987  DGSIIPTQFSHSSLLAFCHEQKEFVIGNEEKPIIGGIEFSSGMGLLHTALLGVYAGVPTL 1046

Query: 406  FI 411
             I
Sbjct: 1047 LI 1048


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 605 DDNDHGFAPSATSSIRSELNEISLWSRVAN-KPQCRSRDLTMAIDA 471
           D   H  +PSATSSI+   N  S++ R ++ + Q +S   T+ I A
Sbjct: 579 DTESHSPSPSATSSIKK--NPSSIFRRFSSRRKQNKSSTSTLQISA 622


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 647  RRRDMPVRLQQRVDDGVHPSCRTR 718
            RR D  +RL  R+   + P+CR R
Sbjct: 1889 RRNDDSIRLSLRISMDIPPTCRNR 1912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,395
Number of Sequences: 5004
Number of extensions: 56128
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)