Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2185
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437... 32 0.41
02_01_0090 - 637141-640263 30 1.7
01_02_0127 + 11377064-11377801 30 1.7
06_03_0746 - 24111579-24112348,24113164-24113256,24113355-241134... 29 3.8
03_01_0454 - 3484319-3486265 29 5.1
07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547 28 6.7
04_04_0429 - 25150266-25150916 28 6.7
03_05_0675 + 26630466-26632070 28 6.7
12_02_0556 + 20415683-20416841,20417563-20417726,20417837-204179... 28 8.8
04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285 28 8.8
>02_01_0590 +
4376785-4377009,4378153-4378407,4378514-4378641,
4378738-4378779,4378875-4378956,4379035-4379103,
4379180-4379350,4379430-4379495,4379777-4379845,
4379928-4380056,4380845-4380881,4380906-4380997,
4381541-4381602,4381855-4381918
Length = 496
Score = 32.3 bits (70), Expect = 0.41
Identities = 23/101 (22%), Positives = 43/101 (42%)
Frame = +1
Query: 250 VTRASMLAHCRMLSVACNYTEGEHMVCVLDFKRETGLWHAVLASVLNGMHVIFIPYALMK 429
V S + H +L C++TEGE + ++ + +H + +S G FI + L +
Sbjct: 82 VKMMSTIDHDNLLGAYCSFTEGETLWIIMPYMAGGSCFHLMKSSYPKGFDEKFIAFVLRE 141
Query: 430 VSPASWMHMITKHRASIAIVKSRDLHWGLLATRDHKEISLS 552
+ HR ++ RD+ G + HK + L+
Sbjct: 142 TLEG----LAYLHRYALV---HRDVKAGNILLDQHKGVKLA 175
>02_01_0090 - 637141-640263
Length = 1040
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 223 ADGSAMGVIVTRASMLAHCRMLSVACNYTEGEHMVCVLDF-KRET-GLWHAVLASVLNGM 396
+D + G I + L+H R+L++ CN+ +G + D K E LW+ L L
Sbjct: 296 SDNAFTGAIPDEVAQLSHLRLLNLMCNHLDGVVPAAIGDMPKLEVLELWNNSLTGSL--- 352
Query: 397 HVIFIPYALMKVSPASWM 450
P +L + SP W+
Sbjct: 353 -----PASLGRSSPLQWV 365
>01_02_0127 + 11377064-11377801
Length = 245
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -1
Query: 594 PRICSVRNQQHPQRAQRDFLVVACGQQAPVQIA---GLNNGDRCPVLGDHVHPRSGADLH 424
PR+ + +QHP+ + D V A G+ V +A L V+G ++GA L
Sbjct: 160 PRVLAALRRQHPRNGEADEAVAAVGRSLRVLLAAADALRERTVRDVVGTLAPDQAGAFLA 219
Query: 423 QSVRYEDDVH 394
+R+ VH
Sbjct: 220 AMLRFHLGVH 229
>06_03_0746 -
24111579-24112348,24113164-24113256,24113355-24113460,
24113587-24113783,24113893-24114103,24114198-24114273,
24114347-24114426,24114659-24114754,24114894-24114965,
24115067-24115264,24115273-24115569
Length = 731
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 208 EHTSAADGSAMGVIVTRASMLAHCRMLSVACNYTEGEHMVCVLDFKRETGLWHAVL 375
+HT A +G A+G++V A A R+ SV YT H ETG + VL
Sbjct: 107 QHTVAGNGKALGMVVAMADYFAG-RVRSVIQRYTIERHWT---SLNEETGGMNDVL 158
>03_01_0454 - 3484319-3486265
Length = 648
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +2
Query: 494 PAICTGACWPHATTRKSR*ARCGCCWLRTEQIRGHCHRAISSSLYSKQGSPRRR 655
PA A A R + C LR + RG C R I SSL +P+ R
Sbjct: 34 PATADLAAAATAAAAAGRASECQSLLLRMSRRRGACRREIVSSLLGSSPTPQPR 87
>07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547
Length = 690
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 250 VTRASMLAHCRMLSVACNYTEGEHMVCVLDFKRETGLWHAVLASVLNGMHVIFIPYALMK 429
V A+ AHCR LS E ++ E G W + L G+HV P+ + K
Sbjct: 64 VDNANPGAHCR-LSELFRPVRTETSCVIIGRALECGRWSESVELELEGLHVELDPFVVNK 122
Query: 430 V 432
V
Sbjct: 123 V 123
>04_04_0429 - 25150266-25150916
Length = 216
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 80 HPVTWSRFAVGRPYIGCRPRNCRVRRATGSRLLVRLMNVQRTSNTPPPLTDP 235
+P +R A+G R R R+RR GS L + R +PPP + P
Sbjct: 96 NPKRRARAAIGGRSSRSRRRRLRLRREDGSFLNLHETGCARLDFSPPPPSSP 147
>03_05_0675 + 26630466-26632070
Length = 534
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 262 SMLAHCRMLSVACNYTEGEHMVCVLDFKRETGLWHAVLA 378
++L+H +L C++T G H+ V+ F G H++L+
Sbjct: 80 ALLSHRNVLRAHCSFTVGSHLWVVMPF-MAAGSLHSILS 117
>12_02_0556 +
20415683-20416841,20417563-20417726,20417837-20417926,
20427889-20429145
Length = 889
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 224 LTDPQW-ELSLPGLQCWRTVGCSRWP 298
L D QW ++ PGL+ R GCSR P
Sbjct: 281 LPDLQWLDVDAPGLRLLRVGGCSRLP 306
>04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285
Length = 488
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 575 ATSSIRSELNEISLWSRVA 519
ATS++ S L ++S+WSR+A
Sbjct: 304 ATSNVASRLRKVSMWSRMA 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,947,619
Number of Sequences: 37544
Number of extensions: 475773
Number of successful extensions: 1586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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