Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2185
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 7e-13
SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16) 46 2e-05
SB_51021| Best HMM Match : Podocalyxin (HMM E-Value=3.3) 31 1.3
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.7
SB_36713| Best HMM Match : ResIII (HMM E-Value=1) 30 2.2
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5) 29 5.2
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5) 29 5.2
SB_52917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072) 28 6.8
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22) 28 6.8
SB_30122| Best HMM Match : YadA (HMM E-Value=2) 28 9.0
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09) 28 9.0
>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 71.3 bits (167), Expect = 7e-13
Identities = 33/63 (52%), Positives = 42/63 (66%)
Frame = +1
Query: 190 ECPAHIEHTSAADGSAMGVIVTRASMLAHCRMLSVACNYTEGEHMVCVLDFKRETGLWHA 369
E P+ + DG+ MGV VTR SM H + L+ AC+Y EGE M+ VLD KRE GLWH+
Sbjct: 915 EPPSAKDSLLGRDGAVMGVTVTRMSMALHSQTLTQACDYVEGEVMISVLDSKREVGLWHS 974
Query: 370 VLA 378
V+A
Sbjct: 975 VMA 977
>SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)
Length = 980
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/94 (25%), Positives = 45/94 (47%)
Frame = +1
Query: 190 ECPAHIEHTSAADGSAMGVIVTRASMLAHCRMLSVACNYTEGEHMVCVLDFKRETGLWHA 369
E A+++ + + G GV ++ ++ A CR + +AC + LD G
Sbjct: 482 EMIAYLDFSVSTTGMLSGVKMSHTAVTALCRSMKLACELYPSRDIAICLDPYCGLGFLLW 541
Query: 370 VLASVLNGMHVIFIPYALMKVSPASWMHMITKHR 471
LA V +G H I IP ++ +PA W+ + +++
Sbjct: 542 CLAGVYSGHHTILIPPGDLEANPALWLSAVAQYK 575
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 373 LASVLNGMHVIFIPYALMKVSPASWMHMITKHR 471
L SV +G H I IP ++ +PA W+ + +++
Sbjct: 618 LVSVYSGHHTILIPPGDLEANPALWLSAVAQYK 650
>SB_51021| Best HMM Match : Podocalyxin (HMM E-Value=3.3)
Length = 525
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 179 VRLMNVQRTSNTPPPLTDPQ-WELSLPGLQCWRTVGCSRWPATTP 310
++L + R +PPP T P W LS P Q + GC + P
Sbjct: 454 LKLCSRHRAKYSPPPSTPPGFWNLSFPDTQEYMAKGCLKTEEDAP 498
>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1168
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 608 HDDNDHGFAPSATSSIRSELNEISLWSRVANKPQCRSRDLTMAIDALCLVIMCIHEAGLT 429
+DD+D F PS SS+ + + L+S +++K Q + + LC+V + E LT
Sbjct: 580 YDDDDSAFTPSVDSSL--PMYVLPLYSLLSSKEQAKVFQQSPGGARLCVVATNVAETSLT 637
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 569 WLRTEQIRGHCHRAISSSLYSKQGSPRRRDMPVRLQQR 682
++R +R H H ++ LY K+ + RRR P+ +Q R
Sbjct: 1109 YVRINPVRWHSHPSMRVELYGKRVAYRRRMRPLGIQNR 1146
>SB_36713| Best HMM Match : ResIII (HMM E-Value=1)
Length = 433
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 581 PSATSSIRSELNEISLWSRVANKPQCRSRDLT 486
P+ + IR +S+ SRV++KP CR R LT
Sbjct: 174 PAPAAKIRRVEISLSVSSRVSDKPPCRHRPLT 205
>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
Length = 238
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -2
Query: 584 APSATSSIRSELNEI-----SLWSRVANKPQCRSRDLTMAIDALCLVIMCIHEAG 435
AP A SS++ L+E +LW + + R DL M++ +I+ I+EAG
Sbjct: 19 APDANSSLQIILDERLKAVNNLWHELQARAADRQTDLEMSVRNQARIILLINEAG 73
>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
Length = 206
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 635 QGSPRRRDMPVRLQQRVDDGVHPSCRTRGSS 727
+GSPR R P L+Q V +G +P C G S
Sbjct: 81 RGSPRIRGRPSCLEQHVVEGDNPVCGDLGRS 111
>SB_52917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 599 CHRAISSSLYSKQGSPRRRDMPVRLQQRVD 688
CH AI+ S+ K+ SP++R P RL+ +VD
Sbjct: 93 CHTAIAFSIPVKK-SPQKRTPPSRLRGKVD 121
>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
Length = 196
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 621 LCIQSKGVRGDAICPCACSSESMTVC 698
+CI+ G +CP C E +TVC
Sbjct: 1 MCIEEAGNVTSCVCPQVCLDERITVC 26
>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 146 RVRRATGSRLLVRLMNVQRTSNTPPPL 226
R RRAT + LLV L + +T+ +PPP+
Sbjct: 950 RERRATSAILLVILQRLFKTNLSPPPI 976
>SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22)
Length = 1046
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 113 RPYIGCRPRNCRVRRATGSRLLVRLMNVQRTSNTPPPLTDPQWELSLPGLQ 265
R + C PR+ RR G L+++ +N+ PP +W L L Q
Sbjct: 519 RDFPECNPRDTGRRRCDGIHGHKPLVSIYGNANSKPPARIERWALRLQPYQ 569
>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
Length = 408
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = -3
Query: 577 PQPAASAASSTRFPCGRVWPTSPSADR---GT*QWRSMP 470
P + AA ST+FPC W T + G WR P
Sbjct: 347 PLGSPPAAPSTKFPCYSPWSTKSAGTTSRDGAFHWRKQP 385
>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
Length = 1472
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = -3
Query: 577 PQPAASAASSTRFPCGRVWPTSPSADR---GT*QWRSMP 470
P + AA ST+FPC W T + G WR P
Sbjct: 922 PLGSPPAAPSTKFPCYSPWSTKSAGTTSRDGAFHWRKQP 960
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,432,068
Number of Sequences: 59808
Number of extensions: 520604
Number of successful extensions: 1412
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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