Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2185
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 270 7e-73
Z72507-1|CAA96633.2| 172|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68748-8|CAL36498.1| 583|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z68748-4|CAD27622.1| 617|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z68748-3|CAA92953.2| 615|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF125955-10|AAV58866.1| 578|Caenorhabditis elegans Hypothetical... 28 7.9
AF125955-9|AAV58865.1| 597|Caenorhabditis elegans Hypothetical ... 28 7.9
AF125955-8|AAD14712.1| 623|Caenorhabditis elegans Hypothetical ... 28 7.9
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 270 bits (662), Expect = 7e-73
Identities = 127/228 (55%), Positives = 161/228 (70%), Gaps = 18/228 (7%)
Frame = +1
Query: 1 VGFLLGSCGIQYALTSDACLKGLPKT------------------SSGDVVSFRGWPSLHW 126
+GFLLG+CG++ ALTS++C KGLPK +S ++V FRGWP L W
Sbjct: 381 LGFLLGNCGVKVALTSESCYKGLPKKVNTSSTFSAPSGSNSLTGTSSEIVDFRGWPRLWW 440
Query: 127 VSTEKLXXXXXXXXXXXXXADECPAHIEHTSAADGSAMGVIVTRASMLAHCRMLSVACNY 306
TE + ADE A+IE+T+ DG+ G VTR ++ AHCR L+ A Y
Sbjct: 441 AVTEHMSKPSRDWTAPPRLADETIAYIEYTTGNDGTVKGCCVTRQAVFAHCRALTTAMEY 500
Query: 307 TEGEHMVCVLDFKRETGLWHAVLASVLNGMHVIFIPYALMKVSPASWMHMITKHRASIAI 486
E E MVCV+DFKRE GLWHA+LAS+ NGM VIF+PY+LMK++PA+WMHM++K++A+ A+
Sbjct: 501 KEDETMVCVVDFKREVGLWHAILASIFNGMKVIFVPYSLMKMNPATWMHMVSKYQATTAL 560
Query: 487 VKSRDLHWGLLATRDHKEISLSSLRMLLVADGANPWSLSSCDQFLSVF 630
VKSRDLHW LLATRDHK+ISL+SLR LLVADGANPWSLSSCD F + F
Sbjct: 561 VKSRDLHWALLATRDHKDISLASLRTLLVADGANPWSLSSCDAFAAAF 608
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 642 VRGDAICPCACSSESMTVCIRRAG 713
+R DA+CPCA SSE+ T+ IRR G
Sbjct: 615 LRPDAMCPCAGSSETGTISIRRRG 638
>Z72507-1|CAA96633.2| 172|Caenorhabditis elegans Hypothetical
protein F17C11.1 protein.
Length = 172
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 449 CT*SPSTGHRSPLLSPAICTGACWPHATTRKSR*ARCGCCWLRTEQIRGHCHRAISSSLY 628
C SP + + L+ + C W ATT + C CC L T+Q ++SS +
Sbjct: 69 CGKSPVNRNCTALVPDSKCVFK-WAFATTAAATACSCTCCLLGTDQCEMRSSSSMSSGMS 127
Query: 629 SKQGS 643
GS
Sbjct: 128 ISIGS 132
>Z68748-8|CAL36498.1| 583|Caenorhabditis elegans Hypothetical
protein F13H10.3c protein.
Length = 583
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 512 PQCRSRDLTMAIDALCLVIMCIHEAGLTFIRAYGMKMTCI 393
P+ +RDL++ CLV C G TF A+ ++ +CI
Sbjct: 411 PENNARDLSIGY---CLVAFCYVFIGFTFFAAFPVQRSCI 447
>Z68748-4|CAD27622.1| 617|Caenorhabditis elegans Hypothetical
protein F13H10.3b protein.
Length = 617
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 512 PQCRSRDLTMAIDALCLVIMCIHEAGLTFIRAYGMKMTCI 393
P+ +RDL++ CLV C G TF A+ ++ +CI
Sbjct: 445 PENNARDLSIGY---CLVAFCYVFIGFTFFAAFPVQRSCI 481
>Z68748-3|CAA92953.2| 615|Caenorhabditis elegans Hypothetical
protein F13H10.3a protein.
Length = 615
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 512 PQCRSRDLTMAIDALCLVIMCIHEAGLTFIRAYGMKMTCI 393
P+ +RDL++ CLV C G TF A+ ++ +CI
Sbjct: 443 PENNARDLSIGY---CLVAFCYVFIGFTFFAAFPVQRSCI 479
>AF125955-10|AAV58866.1| 578|Caenorhabditis elegans Hypothetical
protein F46E10.1c protein.
Length = 578
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +1
Query: 202 HIEHTSAADGSAMGVIVTRASMLAHCRMLSVACNYTEGEHMVCV 333
+I++TS G G +T ++L + + + Y+E + ++C+
Sbjct: 212 NIQYTSGTTGQPKGATLTHHNVLNNAFFVGLRAGYSEKKTIICI 255
>AF125955-9|AAV58865.1| 597|Caenorhabditis elegans Hypothetical
protein F46E10.1b protein.
Length = 597
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +1
Query: 202 HIEHTSAADGSAMGVIVTRASMLAHCRMLSVACNYTEGEHMVCV 333
+I++TS G G +T ++L + + + Y+E + ++C+
Sbjct: 231 NIQYTSGTTGQPKGATLTHHNVLNNAFFVGLRAGYSEKKTIICI 274
>AF125955-8|AAD14712.1| 623|Caenorhabditis elegans Hypothetical
protein F46E10.1a protein.
Length = 623
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +1
Query: 202 HIEHTSAADGSAMGVIVTRASMLAHCRMLSVACNYTEGEHMVCV 333
+I++TS G G +T ++L + + + Y+E + ++C+
Sbjct: 257 NIQYTSGTTGQPKGATLTHHNVLNNAFFVGLRAGYSEKKTIICI 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,023,730
Number of Sequences: 27780
Number of extensions: 353207
Number of successful extensions: 940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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