Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2182
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    27   0.21 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    27   0.21 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    27   0.21 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   1.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 45  KGSEN--PMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQ 182
           +G+ N  P  T+     N NSNG S +   G  +  D  ++E S SN+
Sbjct: 125 RGNNNNTPSATNNNTNFNNNSNGASSV---GSSSPFDKLIEEDSRSNE 169


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 45  KGSEN--PMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQ 182
           +G+ N  P  T+     N NSNG S +   G  +  D  ++E S SN+
Sbjct: 73  RGNNNNTPSATNNNTNFNNNSNGASSV---GSSSPFDKLIEEDSRSNE 117


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 45  KGSEN--PMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQ 182
           +G+ N  P  T+     N NSNG S +   G  +  D  ++E S SN+
Sbjct: 256 RGNNNNTPSATNNNTNFNNNSNGASSV---GSSSPFDKLIEEDSRSNE 300


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/74 (20%), Positives = 30/74 (40%)
 Frame = +3

Query: 375 DTDSRQSESQHATDSNVGEINENSGNDSNFATEHVNLNVDKSEQLEIVEPCSSPVKDPVI 554
           DT+   S+     +S    +NENS N  +        +V +      ++  +   K+  I
Sbjct: 86  DTNGDTSQVDDQNESLEASVNENSKNGDDDEGHEWQADVSEEAVRARMQDLTEGAKNMTI 145

Query: 555 KQDEGKEFKNQREV 596
             D  K  K++ ++
Sbjct: 146 NDDLEKREKDRMDI 159


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 362 VGCRVTLNRIIFSQC 318
           +GC +  N I+FS C
Sbjct: 259 IGCLIQFNTIVFSFC 273



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 362 VGCRVTLNRIIFSQC 318
           +GC +  N I+F+ C
Sbjct: 540 IGCLIQFNTIVFAFC 554


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 390 QSESQHATDSNVGEINENSGNDSNFAT 470
           ++E++      V +IN NSG+ ++ AT
Sbjct: 2   ENETEPLLSGVVSQINGNSGDSTSSAT 28


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 390 QSESQHATDSNVGEINENSGNDSNFAT 470
           ++E++      V +IN NSG+ ++ AT
Sbjct: 2   ENETEPLLSGVVSQINGNSGDSTSSAT 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,544
Number of Sequences: 336
Number of extensions: 3436
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)