Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2181
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.047
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   0.77 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   3.1  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 0.047
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 147 GLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQS 34
           GL   G SGAALIA       +PE   +V I  D +++
Sbjct: 301 GLLCGGSSGAALIAALKIAKDIPEEKRMVIILPDGIRN 338


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 40  YGIFPDENKCDVFWNC 87
           YG FP++ K   ++NC
Sbjct: 59  YGEFPEDEKLKCYFNC 74


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = -3

Query: 156 ADAGLSVVGKSGAALIAGGFSVPAV----PENVA 67
           + AG+ VVG + A+++AG  S+  V    PE++A
Sbjct: 9   SSAGVGVVGGTIASVVAGAASLTLVKAETPEHLA 42


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 325 RIGYRAPPRDRCNIYGNLRDERDG*T 248
           ++ YR  P+D  N+ G +  E DG T
Sbjct: 39  QVCYRGAPQDSENLLGRVLAEFDGTT 64


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = +1

Query: 115 CSPGLAYDRESRVCMW-ADQVPE 180
           C PG+   ++   C W  DQ  E
Sbjct: 453 CEPGMIKKQQGDTCCWVCDQCEE 475


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 5    SPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPD 127
            SP SP+L+VR    +  +  +ATF     T     +   PD
Sbjct: 1484 SPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRLHVWPD 1524


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 5    SPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPD 127
            SP SP+L+VR    +  +  +ATF     T     +   PD
Sbjct: 1480 SPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRLHVWPD 1520


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = +1

Query: 115 CSPGLAYDRESRVCMW-ADQVPE 180
           C PG+   ++   C W  DQ  E
Sbjct: 543 CEPGMIKKQQGDTCCWVCDQCEE 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,022
Number of Sequences: 438
Number of extensions: 2290
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)