Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2180
         (731 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    28   0.068
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    26   0.36 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.1  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 522 HTGSGLATGPDFGSGNCSVALE 457
           H G+G   GPD G GN SV ++
Sbjct: 309 HAGNGWQWGPDAGLGNLSVCID 330


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 365 NPRTVSKLRPTIRESIPSAEPKLPRS--GSKSVSRATEQFPE 484
           +PRT    +P  ++  P+AE K PR+      ++R   +F E
Sbjct: 208 SPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEFAE 249


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 597 NQLQVQTGQYGHNTGQNYQTSQF-NGQSY 680
           + +Q Q  QYG++  QNY ++   NG  Y
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 597 NQLQVQTGQYGHNTGQNYQTSQF-NGQSY 680
           + +Q Q  QYG++  QNY ++   NG  Y
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 597 NQLQVQTGQYGHNTGQNYQTSQF-NGQSY 680
           + +Q Q  QYG++  QNY ++   NG  Y
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 597 NQLQVQTGQYGHNTGQNYQTSQF-NGQSY 680
           + +Q Q  QYG++  QNY ++   NG  Y
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 157 LNRKRKCKEISSTQHGLHPPTKPTRVSRN 243
           +NR  +  E+   Q   +PPTKP    R+
Sbjct: 534 INRHLRGNELLPMQQSQNPPTKPYGTCRS 562


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,617
Number of Sequences: 336
Number of extensions: 3326
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)