Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2178
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   8.3  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 599 FLNRLLKHIDPYPL-SRMYYNAANTMFYT 682
           F+N+L   +DPY L ++   +A N   YT
Sbjct: 134 FVNQLFSAVDPYGLVAQWATDALNPSVYT 162


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 286  HVQTANDAGSNGHVVGRRAISVGDAFDHSRL 378
            H++   D   +GH+  RR++S     DH  L
Sbjct: 1150 HIEKTIDP--SGHISRRRSMSASSRGDHHHL 1178


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 286  HVQTANDAGSNGHVVGRRAISVGDAFDHSRL 378
            H++   D   +GH+  RR++S     DH  L
Sbjct: 1150 HIEKTIDP--SGHISRRRSMSASSRGDHHHL 1178


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 286  HVQTANDAGSNGHVVGRRAISVGDAFDHSRL 378
            H++   D   +GH+  RR++S     DH  L
Sbjct: 1150 HIEKTIDP--SGHISRRRSMSASSRGDHHHL 1178


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 286  HVQTANDAGSNGHVVGRRAISVGDAFDHSRL 378
            H++   D   +GH+  RR++S     DH  L
Sbjct: 1150 HIEKTIDP--SGHISRRRSMSASSRGDHHHL 1178


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 673 VLHDHGKLCRVQLQV 717
           +LHD   +C  QLQV
Sbjct: 105 ILHDTQPMCNPQLQV 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,198
Number of Sequences: 336
Number of extensions: 3801
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)