Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2178
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 33 0.035
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 31 0.24
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 29 0.98
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.3
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.3
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 26 5.2
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 26 5.2
SPBC216.06c |swi1||replication fork protection complex subunit S... 26 5.2
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 26 5.2
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 26 5.2
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 26 6.9
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 6.9
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 9.2
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 33.5 bits (73), Expect = 0.035
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +2
Query: 158 YSLNSTSSTEYKISDVVMTMIFLLRSEKYHSLFKM--LETTFDDYTCRPQMTQVQTDTLL 331
YSL + ++ + + L E Y L + LE D C P + Q DT+L
Sbjct: 1089 YSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVD---CSPSIIDEQVDTIL 1145
Query: 332 DAVRSLLEMPSTTVDLTT-----VDIMRSSFARCF 421
+A+R ++E+ T L T +D++RS+ F
Sbjct: 1146 EALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 615 SSLFKNSESSQNGISVPLLMYCCGCSICI-FSPRSINNSSRVVRLSRC 475
S +++SE S+N S L+Y C +C+ F +N V L+ C
Sbjct: 570 SDQYEDSEDSRNFPSKLYLVYLSNCPLCLKFKLSKVNQQKATVHLATC 617
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 0.98
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 440 YAKIVLLQNVASQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPFCDDSEFLNRL 613
+++I N+ S DKR E+ + +Q+ Q++ + +IPF S F+ RL
Sbjct: 51 FSQINAAYNILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTSAFVERL 108
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 296 PQMTQVQTDTLLDAVRSLLEMPSTTVDLTTVDIMRSSFARCFNSPIMKYAKIV 454
PQ+T++ + D VR T+D ++++I +S+F +K A ++
Sbjct: 182 PQVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLI 234
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 225 CCDRKSIIRCSKCSKPRL--TTTRADRK*RRFKRTRCWTPCDLC 350
C D K ++C KC KP L + +D + ++CWT C C
Sbjct: 369 CYDNKYAVKCKKCRKPILGISVKGSDGE----YHSQCWT-CGAC 407
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 566 GTEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTM 673
GT I E N L ID PLSR Y+NA T+
Sbjct: 1198 GTMIAAETFDELENNLALAIDRLPLSRNYFNAGLTL 1233
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 569 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 670
TE+ FC DS++ R L + YPL Y + T
Sbjct: 388 TELFFCSDSKYYVRHLVNQQVYPLIDCGYGPSGT 421
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/63 (19%), Positives = 26/63 (41%)
Frame = +2
Query: 191 KISDVVMTMIFLLRSEKYHSLFKMLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPSTT 370
K D+ + K+ + +++ DY Q+ ++ D LLD R+ +
Sbjct: 438 KDQDITYICLSTAHPAKFDKAVNLALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSGKPN 497
Query: 371 VDL 379
+D+
Sbjct: 498 IDI 500
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 301 NDAGSNGHVVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEI 441
N+ G++G +G+ D+F+ + L D ++ ++ F++SD I
Sbjct: 749 NEGGNDGERMGKNLKGDTDSFNTALLKDGKFRLLLELCGFEESDNNI 795
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +2
Query: 380 TTVDIMRSSFARCFNSPIMKYAKIVLLQNVASQRDKRT-TLEELLIERGEKIQMLQPQQY 556
TTV + + A+ F + K LLQ S+R+ ++E + E Q
Sbjct: 149 TTVQFLPTRLAKIFEKKASEVLKDNLLQTCNSKREGEVCDVKEPAVASSESSDCFNDMQE 208
Query: 557 INSGTEIPFCDDSEF-LNRLL 616
+N+ ++ +S F NRLL
Sbjct: 209 LNNIVDLRDYSNSRFQQNRLL 229
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 128 RNAARKLIHHYSLNSTS 178
R RKL+HH SLN+ S
Sbjct: 65 RKPTRKLVHHISLNNVS 81
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 569 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 670
TE+ C+DS++ R L + + +PLS + +NT
Sbjct: 378 TELFQCEDSKYYVRHLVNEEVFPLSDCGFGPSNT 411
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 715 LAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPVQKL 596
L +GH FHG V GRI++ T Y E+ V ++
Sbjct: 273 LVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAGERAVLRI 312
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 182 TEYKISDVVMTMIFLLRSEKYHSLFKMLETTFDDYTCRPQMTQVQTD 322
T+Y ++ V T+ LLR YH++ + + T ++ + Q++ D
Sbjct: 322 TDYNVNFSVSTLNQLLRLNLYHAMDEKISTFSSEHITKLIEQQIKPD 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,036
Number of Sequences: 5004
Number of extensions: 61099
Number of successful extensions: 223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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