Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2178
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           30   2.4  
02_05_0433 - 28939817-28940146                                         29   3.1  
07_03_1289 + 25531531-25531995                                         28   7.2  
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473...    28   7.2  
04_01_0206 + 2507827-2508705,2508844-2509902                           28   7.2  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    28   9.5  

>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/78 (21%), Positives = 36/78 (46%)
 Frame = +2

Query: 383 TVDIMRSSFARCFNSPIMKYAKIVLLQNVASQRDKRTTLEELLIERGEKIQMLQPQQYIN 562
           ++D +  + AR F SP+ +     ++  +A  ++K+T +E  + +    +    P  +  
Sbjct: 333 SIDQVAKTAARVFGSPVRQ----PVVSPLAPGKEKKTAVETSVSDYSLAVPHFAPGDFET 388

Query: 563 SGTEIPFCDDSEFLNRLL 616
               IPF +     NRL+
Sbjct: 389 RAELIPFVEGKSIFNRLI 406


>02_05_0433 - 28939817-28940146
          Length = 109

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = -1

Query: 397 HNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGF-EHFEQRMI 242
           H +D R+ +   RH Q+R+  ++Q+ R +++ L   R+++++ + E  EQR +
Sbjct: 32  HRLDVRRQEALERHAQERA-AIEQQWRQSMQALERERLMLEQAWMEREEQRRV 83


>07_03_1289 + 25531531-25531995
          Length = 154

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 365 SKASPTEIARRPTTCPFEPASFAVCTCSRQT 273
           SK  PT  A RPT     PA   V  C  QT
Sbjct: 99  SKLQPTPAAARPTATGAPPAMVVVSACQFQT 129


>07_01_0633 -
           4735298-4735485,4736083-4736114,4736203-4736297,
           4736414-4736487,4736682-4736817,4736902-4736965,
           4737101-4737166,4737265-4737446,4737824-4737948,
           4738031-4738169,4738250-4738369,4738675-4738746,
           4738900-4738935,4739633-4739749,4739821-4739953,
           4740053-4740156,4740243-4740370,4740880-4741010,
           4741561-4741757,4743906-4744583
          Length = 938

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 667 YHVLHDHGKLCRVQLQVQHLRITITYLR 750
           YHVLHD  +    QLQ+    +  TY R
Sbjct: 842 YHVLHDENRFSADQLQMLTYNLCYTYAR 869


>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 358 HLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEHF 257
           +LQ R H +++   L+L++  S   + KRG  +F
Sbjct: 190 YLQDRDHRIREEEELSLQYAHSLHHICKRGIVNF 223


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 458 LQNVASQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPF 583
           L  VA  R     LEEL  E+G ++Q+     Y+    E+ F
Sbjct: 840 LAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNF 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,925,107
Number of Sequences: 37544
Number of extensions: 402921
Number of successful extensions: 1241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)