Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2178
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    29   3.7  
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    29   4.9  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    29   4.9  
AC024859-15|AAK29973.1|  277|Caenorhabditis elegans Hypothetical...    29   4.9  
U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine rece...    28   6.5  
U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine rece...    28   6.5  
AF003141-1|AAK21483.1|  355|Caenorhabditis elegans Hypothetical ...    28   6.5  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    28   8.6  
AF067211-3|ABC71845.1|  720|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF067211-2|AAC16990.3|  745|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    28   8.6  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    28   8.6  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    28   8.6  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    28   8.6  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical
           protein C05D11.8 protein.
          Length = 873

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 373 DCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEHFEQRMILFRSQ 227
           D   +HL     GVQ R+ +    + S  + ++RGFE  + R    + Q
Sbjct: 751 DSSEKHLLTILQGVQTRIDVMAEGIESFEIWIERGFETLKARACRIKQQ 799


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 230 RSEKYHSLFKMLETTFDDYTCRPQMTQ--VQTDTLLDAV 340
           RS  Y  L + L   F DY CR Q++      D L+D +
Sbjct: 442 RSSMYRQLEEQLNKAFPDYVCRSQLSSDYESADILVDPI 480


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 562 QRYRNSVLRRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDHGKLCRVQL 711
           +R R S L     FE+A++ +  + ++ D+LQ  Q  +  D  KLC  Q+
Sbjct: 292 ERLRTSQLEMATKFEEASRENTDLLSKIDILQ-DQLSLEEDRRKLCEEQI 340


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 562 QRYRNSVLRRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDHGKLCRVQL 711
           +R R S L     FE+A++ +  + ++ D+LQ  Q  +  D  KLC  Q+
Sbjct: 292 ERLRTSQLEMATKFEEASRENTDLLSKIDILQ-DQLSLEEDRRKLCEEQI 340


>AC024859-15|AAK29973.1|  277|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.6 protein.
          Length = 277

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 431 IMKYAKIVLLQNVASQRDKRTTLEELLIERGEKIQM 538
           + KY   +++ N+ S R +R TL    IE+GE+I +
Sbjct: 213 LSKYGHQLVIANMLSTRKQRVTLVRKNIEQGEEINL 248


>U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 9 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 161 SLNSTSSTEYKISDVVMTMIFLLRSEKYHSLF 256
           S+NST ST++++ +V  + +F++    YH  F
Sbjct: 227 SINSTLSTKFQLEEVYFSTMFVITVVFYHVAF 258


>U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 8 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 161 SLNSTSSTEYKISDVVMTMIFLLRSEKYHSLF 256
           S+NST ST++++ +V  + +F++    YH  F
Sbjct: 227 SINSTLSTKFQLEEVYFSTMFVITVVFYHVAF 258


>AF003141-1|AAK21483.1|  355|Caenorhabditis elegans Hypothetical
           protein W02D3.4 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +2

Query: 458 LQNVASQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYP 637
           L+N+ S+  K     E   + G + ++L+P + +NSGT+  F   +  +      +   P
Sbjct: 158 LENLNSEEKKALNTTESSDDGGLETEVLRPDKNLNSGTQRFFAFITAIVAGFFYGMTFVP 217

Query: 638 LSRMYYNAANTMFY 679
           + RM  N     FY
Sbjct: 218 VIRMIDNPQLYPFY 231


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 448 FRVFHNRT-VETTCKRRPHNIDGRQVD 371
           F  F  +T V+   K+RPH IDG+ VD
Sbjct: 68  FVTFSGKTEVDAAMKQRPHIIDGKTVD 94


>AF067211-3|ABC71845.1|  720|Caenorhabditis elegans Hypothetical
           protein B0205.1b protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 302 MTQVQTDTLLDAVRSLLEMPSTTVD-LTTVDIMRSSFARCFNSPIMKY 442
           +T +++DTL+D +R + E+ + T D +   D++  +   CF     K+
Sbjct: 604 LTSLESDTLIDLMREIKELRNRTNDEILPPDLVIPALQTCFMGITRKF 651


>AF067211-2|AAC16990.3|  745|Caenorhabditis elegans Hypothetical
           protein B0205.1a protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 302 MTQVQTDTLLDAVRSLLEMPSTTVD-LTTVDIMRSSFARCFNSPIMKY 442
           +T +++DTL+D +R + E+ + T D +   D++  +   CF     K+
Sbjct: 629 LTSLESDTLIDLMREIKELRNRTNDEILPPDLVIPALQTCFMGITRKF 676


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 448 FRVFHNRT-VETTCKRRPHNIDGRQVD 371
           F  F  +T V+   K+RPH IDG+ VD
Sbjct: 30  FVTFSGKTEVDAAMKQRPHIIDGKTVD 56


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 448 FRVFHNRT-VETTCKRRPHNIDGRQVD 371
           F  F  +T V+   K+RPH IDG+ VD
Sbjct: 30  FVTFSGKTEVDAAMKQRPHIIDGKTVD 56


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 448 FRVFHNRT-VETTCKRRPHNIDGRQVD 371
           F  F  +T V+   K+RPH IDG+ VD
Sbjct: 68  FVTFSGKTEVDAAMKQRPHIIDGKTVD 94


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 448 FRVFHNRT-VETTCKRRPHNIDGRQVD 371
           F  F  +T V+   K+RPH IDG+ VD
Sbjct: 68  FVTFSGKTEVDAAMKQRPHIIDGKTVD 94


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 25/64 (39%), Positives = 29/64 (45%)
 Frame = -1

Query: 388 DGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEHFEQRMILFRSQQKYHGH 209
           DGR VD G +HL  R   V    RL LR+     V +  GF   E    LF+    Y GH
Sbjct: 586 DGRYVDYGTQHLDNR-RVVPYNKRLLLRYNAHMNVEI-CGF--IEAVKYLFK--YVYKGH 639

Query: 208 DHVA 197
           D  A
Sbjct: 640 DRAA 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,283
Number of Sequences: 27780
Number of extensions: 369948
Number of successful extensions: 1232
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)