Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2177
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8D2B9 Cluster: DNA ligase; n=2; Bacteria|Rep: DNA liga...    35   1.8  
UniRef50_Q6JP95 Cluster: Putative uncharacterized protein; n=2; ...    34   3.1  
UniRef50_Q9VJM0 Cluster: CG12455-PA, isoform A; n=4; Sophophora|...    33   4.2  
UniRef50_Q6V4Z7 Cluster: Labial-like protein; n=1; Schistosoma m...    33   4.2  
UniRef50_A4VF15 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_UPI00015BCF35 Cluster: UPI00015BCF35 related cluster; n...    33   7.3  
UniRef50_A3HUB0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  
UniRef50_Q30RG8 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  
UniRef50_Q7RHM6 Cluster: Zinc finger C-x8-C-x5-C-x3-H type, puta...    32   9.6  
UniRef50_Q245P4 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  

>UniRef50_Q8D2B9 Cluster: DNA ligase; n=2; Bacteria|Rep: DNA ligase
           - Wigglesworthia glossinidia brevipalpis
          Length = 591

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 195 DNTFNYQNLSQFIDLTRKNIFVNENRXXXXXXEL*SISVHRHYK 326
           ++ FNY+NL  F +  +KN+F NE R      ++  ++++  YK
Sbjct: 89  ESIFNYKNLLNFHEKVKKNLFYNEKRYYCCELKIDGLAINLIYK 132


>UniRef50_Q6JP95 Cluster: Putative uncharacterized protein; n=2;
           Nucleopolyhedrovirus|Rep: Putative uncharacterized
           protein - Neodiprion lecontii NPV
          Length = 283

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 96  TNILSTKDIIKYCTNSKLIY--TTIGSGKYTYSTD---DNTFNYQNLSQFIDLTRKNIFV 260
           TNI+  + IIK+C N    Y  T I +  Y +STD   D+   + + +  +DL  K  F 
Sbjct: 198 TNIIXGRQIIKHCNNLNRSYNITQIDNNTYLHSTDIIFDDICTHVDSNFDLDLNSKGFFC 257

Query: 261 NENR 272
            + R
Sbjct: 258 GKKR 261


>UniRef50_Q9VJM0 Cluster: CG12455-PA, isoform A; n=4; Sophophora|Rep:
            CG12455-PA, isoform A - Drosophila melanogaster (Fruit
            fly)
          Length = 2190

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 138  NSKLIYTTIGSGKYTYSTDDNTFNYQNLS 224
            NS  + T I S  YT ST DNT +Y NLS
Sbjct: 1814 NSTTVTTNIHSSTYTTSTTDNTTSYPNLS 1842


>UniRef50_Q6V4Z7 Cluster: Labial-like protein; n=1; Schistosoma
           mansoni|Rep: Labial-like protein - Schistosoma mansoni
           (Blood fluke)
          Length = 318

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
 Frame = +3

Query: 180 TYSTDDNTFNYQNLSQFIDLTRKNIFV-NENRXXXXXXEL*SISVHRHYKKLF*LWQ*E- 353
           T++T  NT    N S+ I  +  N F+   N       E+  IS     +    +W  E 
Sbjct: 1   TFTTKSNTIKKSNSSKSIVSSNSNNFLLTNNVKFQDNSEMNKISAISSLETNSSVWMSEL 60

Query: 354 PDHVIITNRTFKLNKT-----CITLLNSINLLHKYDFLLIKQRHRNLE 482
            DH+    R F  N+      C T+ +SIN LH+ +  L     R+++
Sbjct: 61  SDHMESNQRMFNANRNYDPLPCTTINDSINNLHRDETTLNYNNERSID 108


>UniRef50_A4VF15 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1059

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
 Frame = -1

Query: 487 SGSRFRCRCLI---NRKSYL--CSKLIEFSSVIHVLFSLNVLFVIMT*SGSHCHN*KSFL 323
           +G  FRC CLI   N+K+ L   + +IE   +I  L    +LF+I T   +H    +SFL
Sbjct: 723 NGQLFRCLCLIDDLNQKNKLQVFNLIIENKKIIQSLSPDLILFIICT-FAAHSFKEESFL 781

Query: 322 **R--*TEIDYNSISIQSILFSFTNIFFRVKSIN 227
             R    EID+   S  SIL    NI+ +  S++
Sbjct: 782 LIRQFNKEIDWIQASYPSIL---VNIYLKFNSVS 812


>UniRef50_UPI00015BCF35 Cluster: UPI00015BCF35 related cluster; n=1;
           unknown|Rep: UPI00015BCF35 UniRef100 entry - unknown
          Length = 141

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 129 YCTNSKLIYTTIGSGKYTYSTDDNTFNYQNL-SQFIDLTRKNIFV 260
           Y T + L+Y  +GS KY YS +D T  +QN+  Q  D    N+++
Sbjct: 66  YLTKNNLVY--VGSNKYPYSLNDLTSYFQNIKKQVKDSKDINVYI 108


>UniRef50_A3HUB0 Cluster: Putative uncharacterized protein; n=1;
           Algoriphagus sp. PR1|Rep: Putative uncharacterized
           protein - Algoriphagus sp. PR1
          Length = 379

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 147 LIYTTIGSGKYTYSTDDNTFNYQNLSQFIDLTRKN 251
           +I  T+GSG YTY+T +++ N+ +L   I  T+K+
Sbjct: 233 IITCTVGSGIYTYNTSNDSLNFVDLPHKIIPTKKS 267


>UniRef50_Q30RG8 Cluster: Putative uncharacterized protein; n=1;
           Thiomicrospira denitrificans ATCC 33889|Rep: Putative
           uncharacterized protein - Thiomicrospira denitrificans
           (strain ATCC 33889 / DSM 1351)
          Length = 859

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 99  NILSTKDIIKYCTNSKL-IYTTIGSGKYTYSTDDNTFNYQNLSQFIDLTRKNIFVNENR 272
           +I++ KD ++  ++ K+  YT I   K  YS  DN+FN+    + + L R ++ V   R
Sbjct: 449 SIINFKDSLEVTSSVKIPFYTLILDSKRDYSGKDNSFNFVYKDKELILNRYDVSVENQR 507


>UniRef50_Q7RHM6 Cluster: Zinc finger C-x8-C-x5-C-x3-H type,
           putative; n=4; Plasmodium (Vinckeia)|Rep: Zinc finger
           C-x8-C-x5-C-x3-H type, putative - Plasmodium yoelii
           yoelii
          Length = 613

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = +3

Query: 72  SILNRTV*TNILSTKDIIKYCTN--SKLIYTTIGSGKYTYSTDDNTFNYQNLSQFIDLTR 245
           +ILN+    N+  TK+ ++Y     S +I T     KY  S  D+ ++  N+  F + T 
Sbjct: 485 NILNQIFKKNLQITKNKMEYLNEKASPIISTYERIFKYD-SKYDSKYD-GNIDSFTNYTH 542

Query: 246 KNIFVNEN 269
           KN+FVNEN
Sbjct: 543 KNMFVNEN 550


>UniRef50_Q245P4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1170

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 135 TNSKLIYTTIGSG--KYTYSTDDNTFNYQNLSQFIDLTRKNIFVNENR 272
           T S+ ++  I     K+T+ T +N   Y ++ Q IDL +KNI ++ NR
Sbjct: 220 TQSQQLFNIINQNFNKWTFLTQNN---YTSIQQMIDLCKKNIIIDYNR 264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,505,373
Number of Sequences: 1657284
Number of extensions: 8515046
Number of successful extensions: 18092
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18092
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)