Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2177
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    27   1.7  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   6.7  

>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 114 KDIIKYCTNSKLIYTTIGSGKYTYSTDDNTFNYQN 218
           KDI  YC N+K+  T +GS    + T+    N  N
Sbjct: 340 KDIESYCHNTKMSITGLGSIMNIHFTESGRVNSYN 374


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 43  MIEAYNLSTNRY*IGQFRLTFYQLK 117
           +I+AY  ST RY +  F+  FY +K
Sbjct: 235 IIDAYLSSTLRYYLDSFKKNFYNVK 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,824
Number of Sequences: 5004
Number of extensions: 41287
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)