Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2177
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0018 + 10653564-10653618,10654307-10654686                       29   3.9  
02_01_0423 - 3092863-3094959                                           28   6.9  

>06_02_0018 + 10653564-10653618,10654307-10654686
          Length = 144

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 354 PDHVIITNRTFKLNKTCI---TLLNSINLLHKYDFL 452
           PD ++I N T+K+NK C     L ++  LL +  FL
Sbjct: 108 PDTILIANSTYKINKICAFRRLLFHNCVLLSRTSFL 143


>02_01_0423 - 3092863-3094959
          Length = 698

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = +3

Query: 6   NNFIKTILTKIWNDRSL*FIN*SILNRTV*TNILSTKDIIKYCTNSKLIYTTIGSGKYTY 185
           N+F   +  KI N + L F+  S+++ ++ TNI  +  I++ C N   +       + T 
Sbjct: 368 NSFHGQLSEKIRNLKCLSFV--SLVDISL-TNITGSLQILQSCRNLTTLLIGYNFMQETM 424

Query: 186 STDDNTFNYQNLSQF 230
             DD  + ++NL  F
Sbjct: 425 PEDDEIYGFENLRIF 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,651,918
Number of Sequences: 37544
Number of extensions: 184886
Number of successful extensions: 278
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)