Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2177
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2678|AAF53505.2| 2190|Drosophila melanogaster CG12455-P...    33   0.24 
AE013599-1132|AAS64877.1|  549|Drosophila melanogaster CG12052-P...    28   8.9  
AB107338-1|BAC67643.1|  549|Drosophila melanogaster Lola protein...    28   8.9  
AB107318-1|BAC67623.1|  549|Drosophila melanogaster Lola protein...    28   8.9  
AB107298-1|BAC67603.1|  549|Drosophila melanogaster Lola protein...    28   8.9  
AB107278-1|BAC67583.1|  549|Drosophila melanogaster Lola protein...    28   8.9  

>AE014134-2678|AAF53505.2| 2190|Drosophila melanogaster CG12455-PA,
            isoform A protein.
          Length = 2190

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 138  NSKLIYTTIGSGKYTYSTDDNTFNYQNLS 224
            NS  + T I S  YT ST DNT +Y NLS
Sbjct: 1814 NSTTVTTNIHSSTYTTSTTDNTTSYPNLS 1842


>AE013599-1132|AAS64877.1|  549|Drosophila melanogaster CG12052-PV,
           isoform V protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 312 ERKSIIILYRFNQFCFHLQIYFFVL 238
           E KS+ +LY  + F + L IY FVL
Sbjct: 511 ETKSVTVLYTIHFFLYILMIYIFVL 535


>AB107338-1|BAC67643.1|  549|Drosophila melanogaster Lola protein
           isoform G protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 312 ERKSIIILYRFNQFCFHLQIYFFVL 238
           E KS+ +LY  + F + L IY FVL
Sbjct: 511 ETKSVTVLYTIHFFLYILMIYIFVL 535


>AB107318-1|BAC67623.1|  549|Drosophila melanogaster Lola protein
           isoform G protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 312 ERKSIIILYRFNQFCFHLQIYFFVL 238
           E KS+ +LY  + F + L IY FVL
Sbjct: 511 ETKSVTVLYTIHFFLYILMIYIFVL 535


>AB107298-1|BAC67603.1|  549|Drosophila melanogaster Lola protein
           isoform G protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 312 ERKSIIILYRFNQFCFHLQIYFFVL 238
           E KS+ +LY  + F + L IY FVL
Sbjct: 511 ETKSVTVLYTIHFFLYILMIYIFVL 535


>AB107278-1|BAC67583.1|  549|Drosophila melanogaster Lola protein
           isoform G protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 312 ERKSIIILYRFNQFCFHLQIYFFVL 238
           E KS+ +LY  + F + L IY FVL
Sbjct: 511 ETKSVTVLYTIHFFLYILMIYIFVL 535


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,295,498
Number of Sequences: 53049
Number of extensions: 370013
Number of successful extensions: 668
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)