Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2177
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   6.2  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U53147-1|AAA96112.1|  132|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 81  NRTV*TNILSTKDIIKYCTNSKLI--YTTIGSGKYTYSTDDNTFNYQNLS--QFI 233
           N TV    L+T DI+ +C+ ++ +      G+G +   T++ T     LS  QFI
Sbjct: 133 NMTVKCKPLATTDILSHCSENEFLNAQALFGNGDFVERTENETIAIPRLSTAQFI 187


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 575 VVVNFDVRNLSFSGFIRTDYYPYS 504
           V +N  V N +FSGF + D Y YS
Sbjct: 273 VTINGTVSNYTFSGFQQVDVYYYS 296


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 575 VVVNFDVRNLSFSGFIRTDYYPYS 504
           V +N  V N +FSGF + D Y YS
Sbjct: 276 VTINGTVSNYTFSGFQQVDVYYYS 299


>U53147-1|AAA96112.1|  132|Caenorhabditis elegans Hypothetical
           protein C01B7.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 393 NKTCITLLNSINLLHKYDFLLIKQRHRNLEPLLFNINT 506
           NK+CIT +   N +  +  LL  + HR ++   F+  T
Sbjct: 47  NKSCITTIQHFNFVSNWGILLAARIHRIIQRAHFSHGT 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,634
Number of Sequences: 27780
Number of extensions: 217255
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)