Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2177
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.7  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 168 SGKYTYSTDDNTFNYQNLSQFIDLTRKNIFVN 263
           S  Y Y+ ++  +NY N ++   L  KN  +N
Sbjct: 319 SNNYNYNNNNYKYNYNNYNK--KLYYKNYIIN 348


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 293 FYIDSINSVFIYKYIFSC*IDKLRK 219
           FYI  I  VF+Y  IF    ++ RK
Sbjct: 352 FYIPCIIMVFLYYNIFKALRNRARK 376


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 345 Q*EPDHVIITNRTFKLNKTCITLLNSINLL 434
           Q  PD  ++T++  K+N     L +++N+L
Sbjct: 297 QQRPDENVVTDKKSKVNFALPELQHNLNIL 326


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 114 KDIIKYCTNSKLIYTTIGSGKYTYSTDDNTFN 209
           KD+  +  N      T G GK   +TD+ +F+
Sbjct: 180 KDLASFMENLLQETRTPGFGKDVLATDERSFS 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,919
Number of Sequences: 438
Number of extensions: 2888
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)