Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2175
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.65
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.6
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 26 6.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 6.0
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 26 6.0
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.0
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.0
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.1 bits (62), Expect = 0.65
Identities = 24/94 (25%), Positives = 43/94 (45%)
Frame = +3
Query: 255 TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 434
T + TP+ +ST+ +SIP+ S + S+ I + + I SS + +T I S
Sbjct: 1264 TVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSS 1323
Query: 435 PLGATTYTTPFVQTVPIASTASLPVAAHLIKKRS 536
+ T +TP + + S S P+ + + S
Sbjct: 1324 TVVNT--STPITSSSVLNS--STPITSSTVVNSS 1353
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 382 ATSLLAPT-SLPTPTSQVALLEPLPTRHPS 468
ATS L PT S P TS +L LPT +PS
Sbjct: 306 ATSTLQPTTSSPITTSAPSLSSALPTTYPS 335
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +3
Query: 300 VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYIT------PNTYIASGPLGATTYTT 461
VSS+PL S + +H P P SY++ ++ + + + S P +Y+T
Sbjct: 460 VSSVPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYST 519
Query: 462 PFVQTVPIASTASL 503
T PI + SL
Sbjct: 520 SSNFTTPITISTSL 533
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 396 SSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 509
S+ T +T I +G G+++ +TP TVP ST+S +
Sbjct: 226 STSCTTSTSIPTG--GSSSLSTPITPTVPPTSTSSTSI 261
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 273 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLG-AT 449
T +T +S P+I++ + ++ S P+ PS+ + T + P G ++
Sbjct: 73 TSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL----PSTSTSCTTSTSIPPTGGSS 128
Query: 450 TYTTPFVQTVPIASTASLPV 509
+ +TP TVP ST+S +
Sbjct: 129 SLSTPITPTVPPTSTSSTSI 148
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 408 TPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAAHLI 524
TP +++ T TPF PI S++S P A H +
Sbjct: 170 TPFRSVSTTSSSNDTSITPFGDQTPILSSSSDPYATHRV 208
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 312 PLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIAS 491
P+ QPIA + ++ P+ A + TPNT + L A Q VP+ S
Sbjct: 232 PMAGQPIAIAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTS 291
Query: 492 TASLPV 509
+ ++ V
Sbjct: 292 SPAMAV 297
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 127 SCIPHPWSTLHRMATLISSRRGLLHM-LRISLLHHTLLFLP 246
S I PW T+ + ISS GL+ L ++L+ H ++P
Sbjct: 225 SMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVRTYIP 265
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 418 PTSQVALLEPLPTRHP-SCRP 477
PTS +ALLE P HP SC P
Sbjct: 171 PTSLIALLELPPVIHPLSCVP 191
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 378 VSYIAPSSYITP-NTYIASGPLGATTY 455
V Y++P+ TP + +I PLG +TY
Sbjct: 806 VQYVSPALKATPPSVWIPKDPLGLSTY 832
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,063
Number of Sequences: 5004
Number of extensions: 49118
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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