Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2175
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 36 0.041
05_03_0090 - 8330283-8330831 31 1.2
03_06_0546 - 34646946-34647289,34647542-34647608 30 2.1
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 29 2.7
08_02_0191 + 14041201-14043894,14044354-14044632 29 3.6
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 29 3.6
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 29 4.8
01_06_0740 + 31603996-31604820,31605080-31605391 29 4.8
12_01_0030 + 262452-263210,263332-263575,263867-264165 28 6.3
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 28 6.3
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 8.3
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +1
Query: 373 GP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQLI 519
GP T +APT PTP PLP RH C R R H PS L+
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68
>05_03_0090 - 8330283-8330831
Length = 182
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 406 SLPTPTSQVALLEPLPTRH-PSCRPCRSHRLHHFPSQLI*SRRGLP 540
SLPTP L PLP RH P+ CR L H + RR P
Sbjct: 87 SLPTPPLSSRHLYPLPPRHRPAPSLCRGDGLSHRRVSPLQGRRSAP 132
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 173 SFH-QEEVCCTCCVYRSCIILCYFSRRSNHL 262
SFH E+ CC CCV+ C + C + HL
Sbjct: 79 SFHLPEDPCCDCCVHALC-LQCALCQEYRHL 108
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 173 SFHQEE--VCCTCCVYRSCIILCYFSRR 250
SF+ E+ V C+CC++ SC ILC + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614
>08_02_0191 + 14041201-14043894,14044354-14044632
Length = 990
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +2
Query: 509 RSSSDQEEVCPRAGDNLHRTYYLHRCSPRSFLSS-VQLQFARRSSCYILHDTSGVL--CS 679
R S D + N Y + R S R SS + L SSC++LH VL C
Sbjct: 713 RFSPDSVSIQGSKESNFRVAYLMCRSSDRQLASSNIALNIQTSSSCHVLHKCRQVLNSCQ 772
Query: 680 YFNSRRLK 703
+S +LK
Sbjct: 773 APSSFQLK 780
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +3
Query: 288 STSYVSSIPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 440
STS+ +P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 441 GATTYTTPFVQTVPIASTASL 503
G ++ T + + I + +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 554 CRQHGGRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSD 405
C+ + G P LD D C R +++G + C GS C G +
Sbjct: 301 CQGYEGNPYLDGGCTDINECLRPEKYGCYGDCTNMLGSHTCVCPPGTSGN 350
>01_06_0740 + 31603996-31604820,31605080-31605391
Length = 378
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 539 GRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARSDVAHGP 372
G D M+CDG+ HG H G + DVG GS AR+ A P
Sbjct: 177 GAAFNDAMACDGRFVMDVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFP 232
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 593 WESSGVSSRYGVSCRQHGGRPLLDQMSCDGK*CSRCD--RHGLHEGCRVGSGS 441
W+S S R+ S + P+ + +C G+ CS CD R LH C GS S
Sbjct: 308 WDSQ--SGRFNKSNSKPICSPVQNYNACFGRLCSFCDEPRTILHPPCATGSHS 358
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -2
Query: 542 GGRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARSDVAHG 375
GG PL+ + + C++ + G VGS ++ A+ +VGV S+ G+ +D +G
Sbjct: 137 GGSPLMLESLPETSDTRGCEQEVM-PGVVVGSSNRDASSEVGVESERGSDADGRNG 191
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 363 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 470
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,777,941
Number of Sequences: 37544
Number of extensions: 396766
Number of successful extensions: 1395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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