Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2175
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11) 31 0.69
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 29 3.7
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 28 8.5
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 8.5
>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
Length = 439
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 491 RCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARS 390
+CD G H C++ +G K TCD G ++VG S
Sbjct: 76 KCDGCG-HGSCQISAGKKSCTCDYGWLNNVGDAS 108
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/80 (30%), Positives = 34/80 (42%)
Frame = +3
Query: 273 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATT 452
TP T S P + + I +P P ++ PS+ TP+T S P +T
Sbjct: 26 TPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPST--PSTPCTPST 83
Query: 453 YTTPFVQTVPIASTASLPVA 512
+TP + P ST S P A
Sbjct: 84 PSTPSTPSTP--STPSTPSA 101
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 345 HFIKKRSPQWPVSYIAPSSYITPNT-YIASGPLGATTYTTPFVQTVPIA-STASLP 506
H +K +P P + PS+ TP+T S P T +TP + PI ST S P
Sbjct: 5 HRLKLSTPSTPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTP 60
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 364 LHNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQ 513
LH+ T+LL P ++ P Q LL+P+ P + S HH+ ++
Sbjct: 668 LHHQNHNTTLLQPVTITPPKPQHTLLQPVTITPPKPQHNTSTTSHHYTTK 717
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 390 APSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 509
APSS +T +GP TT P V T+ +TA+ P+
Sbjct: 804 APSSNPNESTTPTTGPTTGTTALPPGVTTITTPATATTPL 843
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 370 NGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRS 486
N P + LL LPT Q+ L +P P PS P RS
Sbjct: 278 NTPFVSRLLLALVLPTMHLQLLLTKPTPATPPSRAPTRS 316
>SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 255 TTYHGKTPLLASTSYVSSIP 314
T YHG TP ST Y SIP
Sbjct: 387 TPYHGSTPYRGSTPYRGSIP 406
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 357 KRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 506
K++ PVS ++ TP + P T TP +T P ASTA P
Sbjct: 291 KKTTTKPVSQPGETTASTPKAPGPTQPASTTIEATPQPETQPGASTAKAP 340
>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 309 IPLISQPIAYS--AHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVP 482
+P+I P ++ +HF+ S P+ I SSY + +++SG L Y T + + V
Sbjct: 314 LPIIGYPTSHHRVSHFL---SSGIPLPIIGLSSYHRVSHFLSSGCLPIIGYPTSYHRVVF 370
Query: 483 IASTASLPVAAH 518
+S LP+ +
Sbjct: 371 PSSGIPLPIIGY 382
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 360 RSPQWPVSYIAPSSY--ITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 509
R P PVSY P+SY P + +S P+ + + +TP + PI ++S+ V
Sbjct: 40 RRPPVPVSYELPASYQRSVPVSTSSSTPVSSPSNSTP---STPIRKSSSVTV 88
>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1138
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/58 (22%), Positives = 22/58 (37%)
Frame = +2
Query: 521 DQEEVCPRAGDNLHRTYYLHRCSPRSFLSSVQLQFARRSSCYILHDTSGVLCSYFNSR 694
D VC + DN H+ + +FL S+ H G++C + +R
Sbjct: 1025 DNSNVCSSSSDNGSVLTSTHKLNENTFLRETSSINPTESTYAAFHSAQGLVCQFLGNR 1082
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 364 LHNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPC 480
LH+ P + S +P S P + + P P HPS +PC
Sbjct: 463 LHSHP-SPSQPSPVSHPPAQALLHTSHPSPATHPSPKPC 500
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 375 PVSYIAPSSYITPNTYIASGPLGAT-TYTTPFVQTVPIASTASLPVAAHL 521
P + AP + P T AS A T T V T P A+TASL A L
Sbjct: 154 PETTTAPEATTAPETTTASLVTTAPETTTASLVTTAPEATTASLATTASL 203
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +3
Query: 255 TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 434
TT G+T T+ I + + + + PV+ IAP S + P T +A
Sbjct: 1896 TTVAGETTAAPDTTMAPEITVAPETTVAPETTVVPETTSAPVTTIAPESTLVPETTVAPD 1955
Query: 435 PLGATTYTTPFVQTVPIAST 494
A T T+P T
Sbjct: 1956 TTVAPETTVVPETTMPPPKT 1975
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,980,019
Number of Sequences: 59808
Number of extensions: 430256
Number of successful extensions: 1488
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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