Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2172
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   1.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   1.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.4  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 290 LHFYLSWLKDQLKTNNNDYIQSVARCLQ 373
           LHF+ SWLK + K    + I+ +   LQ
Sbjct: 414 LHFHASWLKSK-KEFKEELIKFIEEMLQ 440


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 290 LHFYLSWLKDQLKTNNNDYIQSVARCLQ 373
           LHF+ SWLK + K    + I+ +   LQ
Sbjct: 421 LHFHASWLKSK-KEFKEELIKFIEEMLQ 447


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 188 LNLLNRQDEF-VQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDY 346
           LN LN+  E     +T   +  L  W   L +K+D  +Y+S+  D  K N+  Y
Sbjct: 391 LNPLNKGTEADSSFVTLPQLHSLDEWDDTLKEKADFQYYVSY--DFYKMNHPVY 442


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 505 QNPETKYKLILNLEVHSGGQN 443
           QN  +KYK ++     SGG N
Sbjct: 170 QNRRSKYKKMMKAAQVSGGNN 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,205
Number of Sequences: 336
Number of extensions: 3728
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)