Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2172
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    75   1e-14
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    29   0.85 
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    28   1.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   2.0  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    27   2.6  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    27   3.4  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    27   3.4  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   3.4  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   4.5  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 3/217 (1%)
 Frame = +2

Query: 14  DKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 193
           +++  A + +FL LL+       + + LV + D L      +  F    +  +  +   +
Sbjct: 71  EEDTTAYSNLFLKLLSMKDTPDVVNFALVKLADTLLNSNKFLSAFGPAFY--DFLEKDES 128

Query: 194 LLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQ 373
            +N  D+  + + AR+ A  +   P  + K+    +L +L   +++ N        +CL 
Sbjct: 129 YINYLDDDSKLLFARVFALCSSSSPCSVAKA-FTLFLEYLGKLMQSLNPLTRLFAVQCLN 187

Query: 374 MMLRIDEYRFAFLSVDGIS-TLLSILASRV-NFQVQYQLVFCLWVLTFNPLLAEKMNK-F 544
            +L +  +R+A  + +  S  L  +L + + + Q+QY  +FC W LTF   +A+ +NK F
Sbjct: 188 GVLTLKAHRYALWAENTCSFRLAELLRNSIGDTQLQYYSLFCFWQLTFESHIAQDINKRF 247

Query: 545 NVIPILADILSDSVKEKVTRIVLAVFKNLIEKPGRST 655
           ++I +L  I+    K KV R+VLA+  NLI+K  + T
Sbjct: 248 DLIKLLVQIIRSDTKTKVYRLVLAILVNLIDKAPKDT 284


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 3/171 (1%)
 Frame = +2

Query: 149 RETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLA--CWHPQLMDKSDLHFYLSWLKDQ 322
           R+   S       ++LL   D  VQ+     I+ +A    H + + +S+     S +  Q
Sbjct: 201 RQQLVSAGTIPVLVSLLPSSDTDVQYYCTTSISNIAVDAVHRKRLAQSEPKLVRSLI--Q 258

Query: 323 LKTNNNDYIQSVARCLQMMLRIDE-YRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLW 499
           L   ++  +Q  A      L  DE Y+   +  + + +LL +L S     +    V C+ 
Sbjct: 259 LMDTSSPKVQCQAALALRNLASDERYQIEIVQSNALPSLLRLLRSSY-LPLILASVACIR 317

Query: 500 VLTFNPLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFKNLIEKPGRS 652
            ++ +PL    +     +  L D+LS +  E++    ++  +NL     R+
Sbjct: 318 NISIHPLNESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTLRNLAASSERN 368


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 459 TLEARIDSKVDIP-STERKAKRYSSIRSIICRHRATDWI 346
           TLE  +  K  +  ST  + +RYS+   ++  H A++W+
Sbjct: 566 TLELSLSMKKALTLSTNERNQRYSNCLDVVLTHSASNWV 604


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 1/144 (0%)
 Frame = +2

Query: 143 IFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDK-SDLHFYLSWLKD 319
           I+R  + S + +    N+ N  D F+Q    + ++ L   +P++ DK SDL   +    D
Sbjct: 248 IYRIRQLSTSTYSSEHNIGNISDPFLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTD 307

Query: 320 QLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLW 499
             +   N  +    R +     +D    + L V G++ L   L +R N   +Y  +  L 
Sbjct: 308 SSRNAGNAILYQAVRTI-----LDLNSDSSLRVLGVNILAKFLGNRDN-NTRYVALNMLK 361

Query: 500 VLTFNPLLAEKMNKFNVIPILADI 571
           ++  +   A + ++  ++  L D+
Sbjct: 362 LVVNSEENAVQRHRSTILACLNDV 385


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 394 FIDTQHHLQTPGHRLDIVVVIGLELIFK 311
           F D  HH +  G+ L ++ ++GLE+ ++
Sbjct: 397 FYDELHHHRVSGYSLKMIRLVGLEMAYR 424


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 311 LKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVF 490
           L+D  + +  + +++V  CL  +++  + +  FL  +GI   L IL  +   + +Y  + 
Sbjct: 301 LRDPTQGSEEEMMENVFDCLCSLVQETKGKSLFLKEEGIE--LCILNMKHKGKSRYSTIK 358

Query: 491 CLWVLTFNPL 520
            L  L F PL
Sbjct: 359 VLDYLLFGPL 368


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 151 TKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIGIL 17
           +KY  P+F+F K  ++E + + +G+ +  M   V  + G  I +L
Sbjct: 46  SKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = +2

Query: 152 ETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKT 331
           E++ S  + +   +LL+ QD+  + ++  ++AKL   HP L+ K      + +L   L +
Sbjct: 58  ESRGSMELLENCFSLLHAQDDTSKFVSLTMLAKLLNDHPNLIFKCWERMDMKFLDRLLLS 117

Query: 332 NNNDYI 349
            + +Y+
Sbjct: 118 THYEYV 123


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 116 LSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMD 280
           L  DK+++K+F E K   ++  P  N++   D F       +I +L C H  LM+
Sbjct: 76  LQNDKTKLKLFGEIKVHQSMSHP--NIVGFIDCFEDSTNIYLILEL-CEHKSLME 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,197
Number of Sequences: 5004
Number of extensions: 61194
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)