Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2172
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667... 70 2e-12
07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647... 54 1e-07
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 33 0.22
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 0.89
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280... 31 1.2
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084... 28 6.2
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183... 28 6.2
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 28 6.2
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 28 8.3
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 28 8.3
07_03_1270 + 25351791-25352027,25352122-25352155,25352435-25352493 28 8.3
06_01_0045 + 420300-420530,422730-423006,423974-424014 28 8.3
>07_03_0823 +
21765960-21766064,21766166-21766327,21766616-21766741,
21766831-21766956,21767519-21767698,21768204-21768452
Length = 315
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Frame = +2
Query: 302 LSWLKDQLK--TNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILA---SRVNF 466
+ WL QL+ T+ N + + CL +LR R F+ DG+ L+ +++ ++ +
Sbjct: 29 VDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSI 88
Query: 467 QVQYQLVFCLWVLTFNPLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFKNLIEK 640
Q+ Y+ C+W+L+F + ++ V+P L +++ S KEKV R+V+ +NL+ K
Sbjct: 89 QLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAK 146
>07_03_0822 +
21762662-21762767,21763295-21763347,21764639-21764764,
21764960-21765062,21765146-21765222
Length = 154
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +2
Query: 8 LPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQP 184
L D++ + VFLN+L +ISK+ T++Y+L LID++L+ + R +F + SG +++ P
Sbjct: 92 LLDEDGPSYVRVFLNILRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDP 151
Query: 185 FLN 193
FL+
Sbjct: 152 FLS 154
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +2
Query: 20 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSE-DKSRVKIFRETKFSGNVWQPFL 190
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + D + K+ E + Q
Sbjct: 47 NGETLPHLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMIL---ICQNLR 103
Query: 191 NLLNRQDEFVQHMTARIIAKLACWHPQLMD 280
N L +E+++ +T R + +L P+L++
Sbjct: 104 NNLQHPNEYIRGVTLRFLCRLN--EPELLE 131
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/89 (22%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +2
Query: 20 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 193
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + + + E + Q N
Sbjct: 47 NGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMIL---ICQNLRN 103
Query: 194 LLNRQDEFVQHMTARIIAKLACWHPQLMD 280
L+ +E+++ +T R + +L+ P++++
Sbjct: 104 NLHHPNEYIRGVTLRFLCRLS--EPEVLE 130
>08_01_0317 -
2807275-2807487,2807573-2807737,2807818-2807987,
2808256-2808724,2810581-2810727,2810968-2810976,
2811054-2811890
Length = 669
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 275 MDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSV 418
+D SD+H W+ L++N + + RC +L ID Y FAF SV
Sbjct: 99 LDYSDIH---RWVHHVLRSNARE-VGIFVRCGSKLLSIDGYPFAFNSV 142
>08_02_0107 +
12494650-12495270,12507463-12508146,12508325-12508472,
12508493-12508584,12508713-12509426
Length = 752
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 41 VFLNLLTHISKDHTIQYILVLIDDILSEDKS 133
+F+NL+ + ++ ++++V IDDIL +S
Sbjct: 125 IFMNLMNKVFMEYVDKFVVVFIDDILVYSQS 155
>06_01_0243 -
1837830-1837886,1837969-1838016,1838113-1838255,
1838784-1838982,1839085-1839265,1839857-1840228,
1841453-1841658
Length = 401
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 524 PIGD*MSKPRDKIQVDIEPGSSLW-RPESTVRWIYHRQRGKQSGIHRYAA 378
P G P +++ P S++W R + WIYH + + H Y A
Sbjct: 118 PHGTSEVSPSSRLRHHTSPESTIWTRDPADWPWIYHIRMDRGGSFHTYPA 167
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 446 LASRVNFQVQYQLVFCLWVLTFNPLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFK 625
+A + + V +++ LWV+++ +L + ++P L + D V EK+ + +
Sbjct: 114 IAIKRDRSVFIKVILILWVVSYIGMLFNFLTLIYIVPPLYEKYQDQVDEKIGMAHSVLSR 173
Query: 626 NL---IEKPGRST 655
+L I K G ST
Sbjct: 174 HLDTIISKTGEST 186
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +2
Query: 269 QLMDKSDLHFYLSWLKDQLKTNNN-DYIQSVA----RCLQM 376
QL DKSD + L DQ+K N N ++++ +A +CL M
Sbjct: 329 QLTDKSDENKLEDMLNDQIKNNENMEFLEEMAELARKCLDM 369
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 44 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 136
F+NL+ + ++ ++++V IDDIL K++
Sbjct: 973 FMNLMNKVFMEYLDKFVVVFIDDILIYSKTK 1003
>07_03_1270 + 25351791-25352027,25352122-25352155,25352435-25352493
Length = 109
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1
Query: 613 EHNTRDLLFNGVAKDIS*DWNNIELVHFFSQ*GIECQNPETKYKLILNLEVHSGGQNRQ* 434
EH R N K I DW I S G++ PE +Y +I + + +R
Sbjct: 35 EHTLRTCSINPTKKGIEGDWRRIP-----SFMGMKRTRPEGEYCIIWKNKFMT---SRSC 86
Query: 433 GGYTIDREESKAVFIDTQHHL 371
G ++ +KA+F++ QH +
Sbjct: 87 GCQQGEKATAKAIFLEPQHRV 107
>06_01_0045 + 420300-420530,422730-423006,423974-424014
Length = 182
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 230 SCAGQIHPDGSANSGRAAKRCQRISSHEISSPS 132
S ++ P SAN GRA C R++ EIS S
Sbjct: 51 SATEEVRPHLSAN-GRATSNCSRLARREISGTS 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,681,704
Number of Sequences: 37544
Number of extensions: 397349
Number of successful extensions: 1065
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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