Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2172
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)             153   1e-43
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   29   2.8  
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)                    29   4.8  

>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score =  153 bits (371), Expect(2) = 1e-43
 Identities = 70/137 (51%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
 Frame = +2

Query: 239 IIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSV 418
           I+AKLACW    + +SDL+F+LSWLK+QL +   +Y+ S+A  LQ+MLR++ Y+ AF  +
Sbjct: 123 IVAKLACWGNVRLPESDLNFFLSWLKNQLTSPTCEYLHSIALSLQLMLRVESYKEAFFKL 182

Query: 419 DGISTLL-SILASRVNFQVQYQLVFCLWVLTFNPLLAEKMNKFN-VIPILADILSDSVKE 592
           +GI++++ ++L +++ FQ+QYQL+F LW+L+F+P +AE+M   N VIP+LADIL DS KE
Sbjct: 183 EGINSIVATLLRNKIGFQLQYQLIFTLWLLSFDPRIAERMVGNNAVIPVLADILRDSDKE 242

Query: 593 KVTRIVLAVFKNLIEKP 643
           KVTRI+ A  +NL++KP
Sbjct: 243 KVTRIITATLRNLLDKP 259



 Score = 41.5 bits (93), Expect(2) = 1e-43
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 26  DACAEVFLNLLTHISKDHTIQYILVLIDDILS 121
           D  A+  L+LL  +++DHTI+YILVLIDD+L+
Sbjct: 88  DQLAKTCLSLLVKLTRDHTIRYILVLIDDMLN 119


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
 Frame = +2

Query: 71   KDHTIQYILVLIDDILSEDKSRVKIFRE--TKFSGNVWQPFLNL-----LNRQDEFVQHM 229
            KD T + I+   + I    +   K+  +  T+F   ++Q FL        + + E    +
Sbjct: 674  KDKTGKRIVEAFESIFEGGRQPEKLQTDDGTEFKNRIFQAFLKSQGIQHFSTRSELKASV 733

Query: 230  TARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDE 394
              R    L  W  +     + H Y+  L   +  NN+ Y +S+ R    ++  D+
Sbjct: 734  VERFNRTLKTWMWRWFTYKETHRYVDMLPQLVHNNNHSYHRSIRRAPADVVTYDD 788


>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
          Length = 289

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +2

Query: 47  LNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLNLLNRQ-DEFVQ 223
           + L   I+K H I Y L   D I   + +  ++  +     ++  P+L   N+Q    + 
Sbjct: 121 MRLFDLIAKKHNISYWLTSADYIKFFEVAAKELPSDMFLQNSISDPYLRPDNKQYAASIT 180

Query: 224 HMTARIIAKLACWHPQLMDKSDLHFY 301
           H    I  +   W+P+L DK   + Y
Sbjct: 181 HPKVGIYQR--SWNPRLRDKKSCYKY 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,774,782
Number of Sequences: 59808
Number of extensions: 479853
Number of successful extensions: 1232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)