Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2172
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 208 2e-54
U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 152 3e-37
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical p... 29 2.4
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 29 3.2
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 29 3.2
U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 28 7.4
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 28 7.4
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 208 bits (509), Expect = 2e-54
Identities = 99/205 (48%), Positives = 137/205 (66%), Gaps = 3/205 (1%)
Frame = +2
Query: 35 AEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRET--KFSGNVWQPFLNLLNRQ 208
A+ NL+T ++KD ++Y+L L DD+L EDKSRV++F + VW +L +L RQ
Sbjct: 78 AKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYLGILQRQ 137
Query: 209 DEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNN-NDYIQSVARCLQMMLR 385
D F+ + + IIAKLAC+ M+ DL +Y S+LK+QLK + NDY+ + ARCLQMMLR
Sbjct: 138 DNFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLKNSTTNDYMNTTARCLQMMLR 197
Query: 386 IDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLWVLTFNPLLAEKMNKFNVIPILA 565
DEYR F+ DG+ TL++ L + NFQ+QYQL+F +W LTFN +A K +I L
Sbjct: 198 HDEYRHEFVDSDGVQTLVTALNGKTNFQLQYQLIFAVWCLTFNADIARKAPSLGLIQALG 257
Query: 566 DILSDSVKEKVTRIVLAVFKNLIEK 640
DILS+S KEKV RI+LA F N++ K
Sbjct: 258 DILSESTKEKVIRIILASFVNILSK 282
>U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical
protein F52E1.10 protein.
Length = 451
Score = 152 bits (368), Expect = 3e-37
Identities = 77/202 (38%), Positives = 126/202 (62%), Gaps = 5/202 (2%)
Frame = +2
Query: 44 FLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEF 217
F++L++ ISKD ++Y L LIDD+L ED +R IF + + + F+ LL+RQD++
Sbjct: 72 FVHLMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQY 131
Query: 218 VQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQL-KTNNNDYIQSVARCLQMMLRIDE 394
+ H+T I+ K+A + + +L + + LK+ + + NNDYI + RC+Q + R D
Sbjct: 132 IVHITFSILTKMAVFGNIKLSGDELDYCMGSLKEAMNRGTNNDYIVTAVRCMQTLFRFDP 191
Query: 395 YRFAFLSVDGISTLLSILAS--RVNFQVQYQLVFCLWVLTFNPLLAEKMNKFNVIPILAD 568
YR +F++++G +L L S + FQ+QYQ++FC+W+LTFN AE N+I ++
Sbjct: 192 YRVSFVNINGYDSLTHALYSTRKCGFQIQYQIIFCMWLLTFNGHAAEVALSGNLIQTISG 251
Query: 569 ILSDSVKEKVTRIVLAVFKNLI 634
IL + KEKV RIV++ +NLI
Sbjct: 252 ILGNCQKEKVIRIVVSTLRNLI 273
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 172 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 65
V FR+ Y H FI+ N ++ NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408
>Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical
protein C08H9.5 protein.
Length = 502
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 176 WQPFLNLLNRQDEFVQ--HMTARI--IAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNND 343
W+ L+ LN Q H A I + KL CW + ++ + + + +LKT +N+
Sbjct: 413 WKYVLSYLNEGKRLAQPAHADAEIYNVMKL-CWDLDMNSRTTFLDCIEFFEKELKTTSNE 471
Query: 344 YIQSVARCLQ 373
Y + R L+
Sbjct: 472 YFLDLTRKLR 481
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 654 VDLPGFSIKFLNTASTIRVTFSLTESLRISAKIGITLN 541
+DLPG IK + T F+ E L ISAK G+ ++
Sbjct: 164 IDLPGADIKSVETQLKNLFEFNPEECLHISAKSGLNVD 201
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 212 EFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLK-DQLKTNNNDYIQSVARCLQMMLRI 388
+ V HM A + A L+ + L F ++ D N D++Q + RCL ++LR
Sbjct: 227 DHVNHMVAALCAVADDTGSPLVQRYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLRR 286
Query: 389 D 391
D
Sbjct: 287 D 287
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 212 EFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLK-DQLKTNNNDYIQSVARCLQMMLRI 388
+ V HM A + A L+ + L F ++ D N D++Q + RCL ++LR
Sbjct: 227 DHVNHMVAALCAVADDTGSPLVQRYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLRR 286
Query: 389 D 391
D
Sbjct: 287 D 287
>U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical
protein T19D12.7 protein.
Length = 400
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 609 TIRVTFSLTESLRISAKIGITLNLFIFSA 523
T R+TFSL ES+ + A + ++ ++F SA
Sbjct: 8 TARITFSLLESIFVVASVFLSTHIFYSSA 36
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +2
Query: 389 DEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLWVLT----FNPLLAEKMNKFNVIP 556
D + A + DG+ + +L + + V+ + LW L+ P++ E +
Sbjct: 597 DANKLAVMEADGVRLIAEVLRTTHDASVKEEAAAALWNLSSADMLKPVILESATEILSQQ 656
Query: 557 ILADILSDSVKEKVTRIVLAVFKN 628
++A +L+ + +FKN
Sbjct: 657 VIAPVLAVGTSDPTRHFGSTLFKN 680
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +2
Query: 389 DEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLWVLT----FNPLLAEKMNKFNVIP 556
D + A + DG+ + +L + + V+ + LW L+ P++ E +
Sbjct: 767 DANKLAVMEADGVRLIAEVLRTTHDASVKEEAAAALWNLSSADMLKPVILESATEILSQQ 826
Query: 557 ILADILSDSVKEKVTRIVLAVFKN 628
++A +L+ + +FKN
Sbjct: 827 VIAPVLAVGTSDPTRHFGSTLFKN 850
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,919,211
Number of Sequences: 27780
Number of extensions: 358094
Number of successful extensions: 1160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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