Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2171
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2QV87 Cluster: Expressed protein; n=3; Oryza sativa|Re...    35   1.6  
UniRef50_A2EGX0 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ...    33   6.4  
UniRef50_Q9LRN2 Cluster: Genomic DNA, chromosome 3, P1 clone:MUJ...    33   8.4  

>UniRef50_Q2QV87 Cluster: Expressed protein; n=3; Oryza sativa|Rep:
            Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 1174

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 564  ENWDVCRVIGNETGKIRDEKTQNWNAKRQNRDGLLGLSLIS 442
            E W V + I N+  ++ DE TQN + +R  RD  LG+ + S
Sbjct: 907  ECWSVAQAIVNDDCEVEDEVTQNQDKERMARDDNLGVDMCS 947


>UniRef50_A2EGX0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1939

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +3

Query: 348 CL*YLHKLTDKHINLLYITQLSDSIG*KIYYKISVTTLTSHPYFVFWR-SNFVFSRP*FF 524
           CL YL K+TDK +++L   QLSDS+  K Y  I    +++     + + SNF+      F
Sbjct: 765 CLSYLFKITDKKLDMLGEEQLSDSLLAKNYLAILTNCISATEKQSYKKISNFIDVEK--F 822

Query: 525 QSRSQL 542
           +S+S L
Sbjct: 823 ESKSSL 828


>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
           uncultured bacterium|Rep: Non-ribosomal peptide
           synthetase - uncultured bacterium
          Length = 338

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -2

Query: 643 YDSL*GELGTGPPLE 599
           YDSL GELGTGPPLE
Sbjct: 278 YDSLYGELGTGPPLE 292


>UniRef50_Q9LRN2 Cluster: Genomic DNA, chromosome 3, P1 clone:MUJ8;
           n=2; Arabidopsis thaliana|Rep: Genomic DNA, chromosome
           3, P1 clone:MUJ8 - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 480

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 480 VFWRSNFVFSRP*FFQSRSQLPYIRPNFPQKKKKKTVRGRSRG 608
           V +  N + S+P +F S     +I+   P KKKKKT    +RG
Sbjct: 21  VSFEINIICSKPGYFNSGLVKSHIKRQLPTKKKKKTTVSTNRG 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,778,639
Number of Sequences: 1657284
Number of extensions: 10364482
Number of successful extensions: 23517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23478
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)