Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2171
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    27   2.5  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    27   3.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.6  

>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 542 TLHTSQFSPKKKKKNGPRPLEGGPGTQFAL**VVLQFTGRRF 667
           T    + +P K  KNG   LE   G  FA   V LQF G  F
Sbjct: 87  TFRHPETTPLKSLKNGLNVLELFHGPTFAFKDVALQFLGNLF 128


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 564 PQKKKKKTVRGRSRG 608
           P++KKK+ VRGR RG
Sbjct: 87  PKQKKKEVVRGRGRG 101


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 462 TSHPYFVFWRSNFVFSRP*FFQSRSQLPYIRPNFP 566
           TS+P ++   SN     P  FQ+ SQ PY  P FP
Sbjct: 734 TSYPPYMSPTSNM----PQAFQAYSQYPYQHPPFP 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,644
Number of Sequences: 5004
Number of extensions: 47797
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)