Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2171
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768...    35   0.052
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137...    28   7.9  

>12_01_0830 -
           7678038-7678444,7678996-7680943,7681231-7681983,
           7682701-7682824,7683590-7683723
          Length = 1121

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 564 ENWDVCRVIGNETGKIRDEKTQNWNAKRQNRDGLLGLSLIS 442
           E W V + I N+  ++ DE TQN + +R  RD  LG+ + S
Sbjct: 854 ECWSVAQAIVNDDCEVEDEVTQNQDKERMARDDNLGVDMCS 894


>03_03_0132 +
           14711645-14711839,14712641-14712970,14713689-14713751,
           14713833-14713906,14714004-14714099,14714705-14714759,
           14714867-14714971,14715054-14715135,14715450-14715562,
           14715717-14716118
          Length = 504

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 524 PVSFPITLHTSQFSPKKKKKNGPRPLEGGPGT 619
           P + P  LHTSQ  P  +  N P P  G PGT
Sbjct: 466 PAAPPQELHTSQQMPPPQYGNQPGP-AGAPGT 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,154
Number of Sequences: 37544
Number of extensions: 250430
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)