Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2169
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 108 5e-24
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 107 1e-23
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 91 6e-19
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 87 1e-17
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649... 31 0.94
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 31 1.2
04_04_1036 + 30305548-30305588,30305710-30305761,30306408-303064... 30 1.6
05_06_0076 + 25381814-25381880,25382927-25382967,25383398-253835... 29 2.9
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 29 3.8
07_03_1408 - 26353389-26355191 29 3.8
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 8.7
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 108 bits (259), Expect = 5e-24
Identities = 78/191 (40%), Positives = 94/191 (49%), Gaps = 23/191 (12%)
Frame = -3
Query: 644 TIQIFGAKKALFRALKTKKDTPKYGLIYHAQLVGQCSTKNKGKMSRMLAAKAALATRVDA 465
TIQI GA+KALFRALKTK TPKYGLIYHA L+GQ + K+KGK+SR LAAK ALA R DA
Sbjct: 314 TIQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSLAAKTALAIRYDA 373
Query: 464 FGEDVSFELGAEHKVKXXXXXXXXXXXXXXRISGTGKAKIKFEKYHSK---------SEV 312
G+ +G E +VK R +G+ K K K E Y +
Sbjct: 374 LGDGEDNSIGLESRVKLETRLRVLEGKELGRSAGSTKGKPKIEVYEKDRKKGAGALITPA 433
Query: 311 YQYPDASDNTI-------DKKP----IKREHSPDEDQVSAKKIKLEND---VSKVSLKNI 174
Y A+D + KKP KR+H E + K K + D K K
Sbjct: 434 KTYNPAADLVLGQSTEETPKKPEGASKKRKHQETEPAPAEKTTKEDGDQEGEKKKKKKKS 493
Query: 173 KTENEEPAEDA 141
K E PA DA
Sbjct: 494 KESEESPAADA 504
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 721 IGEHIGARLIAHAGS 677
+GE +GARLIAH GS
Sbjct: 289 VGELVGARLIAHGGS 303
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 107 bits (256), Expect = 1e-23
Identities = 57/105 (54%), Positives = 67/105 (63%)
Frame = -3
Query: 644 TIQIFGAKKALFRALKTKKDTPKYGLIYHAQLVGQCSTKNKGKMSRMLAAKAALATRVDA 465
TIQI GA+KALFRALKTK TPKYGLIYHA L+GQ + K+KGK+SR LAAK ALA R DA
Sbjct: 314 TIQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSLAAKTALAIRYDA 373
Query: 464 FGEDVSFELGAEHKVKXXXXXXXXXXXXXXRISGTGKAKIKFEKY 330
G+ +G E +VK R +G+ K K K E Y
Sbjct: 374 LGDGEDNSIGLESRVKLETRLRVLEGKELGRSAGSTKGKPKIEVY 418
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 721 IGEHIGARLIAHAGS 677
+GE +GARLIAH GS
Sbjct: 289 VGELVGARLIAHGGS 303
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 91.5 bits (217), Expect = 6e-19
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = -3
Query: 644 TIQIFGAKKALFRALKTKKDTPKYGLIYHAQLVGQCSTKNKGKMSRMLAAKAALATRVDA 465
T+QI GA+KALFRALKT+ +TPKYGLI+H+ +G+ STKNKG+M+R LA K ++A+R+D
Sbjct: 328 TLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDC 387
Query: 464 FGEDVSFELG 435
+ E + G
Sbjct: 388 YSESATAVFG 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 721 IGEHIGARLIAHAGSPNEFSKTSCFLQYRFLVQKKLF 611
IGE +GARLI+HAGS + +K +K LF
Sbjct: 303 IGEVVGARLISHAGSLSNLAKCPASTLQILGAEKALF 339
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 87.4 bits (207), Expect = 1e-17
Identities = 36/63 (57%), Positives = 53/63 (84%)
Frame = -3
Query: 644 TIQIFGAKKALFRALKTKKDTPKYGLIYHAQLVGQCSTKNKGKMSRMLAAKAALATRVDA 465
T+QI GA+KALFRALKT+ +TPKYGLI+H+ +G+ ST+NKG+++R LA K ++A+R+D
Sbjct: 346 TLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASTRNKGRIARYLANKCSIASRIDC 405
Query: 464 FGE 456
+ E
Sbjct: 406 YSE 408
>04_04_0750 +
27763841-27763972,27764311-27764485,27764908-27764998,
27764999-27765133,27765683-27765742,27765876-27765951,
27766037-27766174,27766509-27767373,27767763-27767865,
27768101-27768176,27768329-27768393,27768463-27768493,
27768618-27768725
Length = 684
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = -3
Query: 641 IQIFGAKKALFRALKTKKDTPKYGLIYHAQLVGQCSTKNKGKMSRMLAAKAALATRVDAF 462
+Q+ GAK+ T + G + + + + R++AAK+ LA R+D+
Sbjct: 451 VQLLGAKRKNLAGFSTATSQFRVGYLEQTDVFQSTPPALRTRACRLIAAKSTLAARIDSI 510
Query: 461 GEDVSFELG 435
D + + G
Sbjct: 511 RGDPTGKAG 519
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -3
Query: 329 HSKSEVYQYPDASDNTIDKKPIKREHSPDEDQVSAKKIKLENDVSKVSLKNIKTENEEPA 150
H KS + + A +T D+ +HSP ED ++ KI D+S+ N + P
Sbjct: 365 HDKSHLSGFFKARSHT-DETATPTKHSPQEDSKTSTKIPKTRDISEAVGPNSPISTKAPH 423
Query: 149 E 147
E
Sbjct: 424 E 424
>04_04_1036 +
30305548-30305588,30305710-30305761,30306408-30306487,
30307035-30307110,30307169-30307252,30307356-30307501,
30307608-30307826,30308180-30308271,30308677-30308867,
30309100-30309706,30309811-30310004
Length = 593
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = -3
Query: 338 EKYHSKSEVYQYPDASDNTIDKKPIKREHSPDEDQVSAKKIKLE----NDVSKVSLKNIK 171
E+Y S S + D+ DK+P+K S Q S +IK + N+ S SLK+
Sbjct: 186 ERYGSFSGTREGDSYGDSYRDKEPVKSSPSYTGSQKSGSRIKKDVNRRNEDSPSSLKSNA 245
Query: 170 TENEEPAED 144
NE+ +D
Sbjct: 246 KGNEDDFDD 254
>05_06_0076 +
25381814-25381880,25382927-25382967,25383398-25383502,
25383612-25383695,25384069-25384103,25384562-25384647,
25385529-25385594,25385936-25385970
Length = 172
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = -3
Query: 368 SGTGKAKIK-FEKYHSKSEVYQYPDASDNTIDKKPIKREHSPDEDQVSAKK-----IKLE 207
+GT + K F+K S+ EVY SD D+ E D Q + K I++E
Sbjct: 24 AGTSAGRPKNFKKKQSEKEVYDRRQESDEEYDRSQESDEEESDNFQKNKHKGTEGLIEIE 83
Query: 206 NDVSKVSLKNIKTEN 162
N + V KNIK ++
Sbjct: 84 NP-NLVKPKNIKAKD 97
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 275 KKPIKREHSPDEDQVSAKKIKLENDVSKVSLKNIKTENEEPA 150
KK I EH +Q++ K KL N ++ + KN++ N + A
Sbjct: 403 KKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQTA 444
>07_03_1408 - 26353389-26355191
Length = 600
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 353 AKIKFEKYHSKSEVYQYPDASDNTIDKKPIKREHSPDEDQVS-AKKIKLENDVSKVSLKN 177
A I +K + Q A++ +KK K++H +ED +K K+E+D + S+
Sbjct: 441 ASIAAAPEEAKVKAEQDVVATEEVKEKKK-KKKHKDEEDAADEGRKRKIEDDDASASVPV 499
Query: 176 IKTENEEPAED 144
K + EE AE+
Sbjct: 500 KKIKVEESAEE 510
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = -3
Query: 353 AKIKFEKYHSKSEVYQYPDAS--DNTIDKKPIKREHSPDEDQVSAKKIKLENDVSKVSLK 180
++++ ++ + E Y+ S + ++ K + E S DQV+ +K K E K ++K
Sbjct: 851 SRLRVDELSGELEEYKEKRTSLEASLLEAKQKEAELSEKLDQVNEEKEKFEELSKKATIK 910
Query: 179 NIKTENEEPA 150
+++ EN+ A
Sbjct: 911 HLEAENQVQA 920
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,954
Number of Sequences: 37544
Number of extensions: 267518
Number of successful extensions: 670
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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