Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2169
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 696 LLLMQAHLMNLAKHPAFYNTDFWCKKSSFPCLKN 595
           LLL+ A+L+ L    +F+N D   +  +F CL +
Sbjct: 96  LLLLVANLIILPVAISFFNDDLSTRWIAFNCLSD 129


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 696 LLLMQAHLMNLAKHPAFYNTDFWCKKSSFPCLKN 595
           LLL+ A+L+ L    +F+N D   +  +F CL +
Sbjct: 96  LLLLVANLIILPVAISFFNDDLSTRWIAFNCLSD 129


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 696 LLLMQAHLMNLAKHPAFYNTDFWCKKSSFPCLKN 595
           LLL+ A+L+ L    +F+N D   +  +F CL +
Sbjct: 96  LLLLVANLIILPVAISFFNDDLSTRWIAFNCLSD 129


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/35 (20%), Positives = 22/35 (62%)
 Frame = -3

Query: 251 SPDEDQVSAKKIKLENDVSKVSLKNIKTENEEPAE 147
           SP+++++  + +  +N+  + S +++K    +P+E
Sbjct: 332 SPEQEELIHRLVYFQNEYEQPSEEDLKRITNQPSE 366


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 609 EKSFFCTKNLYCKKQDVLLNSLGEPA*AISRAPMC 713
           EKS   TK   CKK  +  NSLG  + +  R   C
Sbjct: 198 EKSENETKT--CKKYAISSNSLGSRSRSFQRTSSC 230


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 293 SDNTIDKKPIKREHSPDEDQVSAKKIKLENDVSKVSLKNIKTENE 159
           S N    +PI +    +  +  +K I   N  + ++LKN  T  E
Sbjct: 56  SSNEALPQPISKRKDKEHKKKKSKTILAVNAEADITLKNAGTPPE 100


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 293 SDNTIDKKPIKREHSPDEDQVSAKKIKLENDVSKVSLKNIKTENE 159
           S N    +PI +    +  +  +K I   N  + ++LKN  T  E
Sbjct: 56  SSNEALPQPISKRKDKEHKKKKSKTILAVNAEADITLKNAGTPPE 100


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 730 LYFIGEHIGARLIAHAGSPNEFSK 659
           L +IG++ G  LI +  S N F +
Sbjct: 200 LVYIGDNEGFALIIYNNSDNSFQR 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,819
Number of Sequences: 438
Number of extensions: 2851
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)