Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2165
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   4.8  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   6.4  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 275 WIRTQQYYYENDPKRVYYL 331
           WI     YY+ DP+R+++L
Sbjct: 246 WIVENAIYYDADPERIFFL 264


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 152 EVKKAFNRHVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYL 331
           E  KAF +H++  L+KD N  T R Y   L       L  R + T Q+++E      + +
Sbjct: 123 EALKAFWKHLYSLLLKDPNDTTFR-YPVCLVIPTYWSLYDRELAT-QFFFEECQVPGFTI 180

Query: 332 SLEYYMG 352
           + E  MG
Sbjct: 181 AYEPLMG 187


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 360 FKIP*STLASKVLLTKHYTNLVWILK 437
           F +   T  +KV  ++ Y NL+W+ K
Sbjct: 148 FLVAGGTFVTKVFRSRDYNNLLWVFK 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,941
Number of Sequences: 5004
Number of extensions: 62803
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)