Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2165
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650...   144   5e-35
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202...   130   8e-31
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657     29   2.9  
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817           28   8.8  

>01_06_1361 -
           36663859-36663985,36664353-36664543,36664746-36665009,
           36665215-36665373,36665476-36665679,36665765-36665983,
           36666191-36666322,36666406-36666523,36666670-36666854,
           36667263-36667355,36667819-36668008,36668500-36668585,
           36668671-36668847,36669141-36669320,36669423-36669623
          Length = 841

 Score =  144 bits (350), Expect = 5e-35
 Identities = 67/159 (42%), Positives = 93/159 (58%)
 Frame = +2

Query: 218 PRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGT 397
           P   +++ A +V+DHLV RW  T  ++++ DPK+ YYLS+EY  GR+L N + NLGI G 
Sbjct: 50  PEQAFYSTAESVRDHLVQRWNETYLHFHKTDPKQTYYLSMEYLQGRALTNAVGNLGITGA 109

Query: 398 VDEALYQXXXXXXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGIFA 577
             EA+ +                       RLA+CFLDSMATL L A+GYG+RY YG+F 
Sbjct: 110 YAEAVKKFGYELEALVGQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFK 169

Query: 578 QKIENGEQQEEPDDWLRFGNPWEKARPEFMLPVNFYGSV 694
           Q I    Q+E  +DWL   +PWE  R + + P+ F+G V
Sbjct: 170 QCITKEGQEEIAEDWLEKFSPWEIVRHDIVYPIRFFGHV 208


>03_06_0026 -
           31118997-31119113,31119700-31119900,31120032-31120218,
           31120339-31120415,31120738-31120815,31120858-31120974,
           31121047-31121175,31121327-31121479,31121589-31122044,
           31122122-31122239,31122385-31122575,31123140-31123415,
           31123524-31123700,31124040-31124141,31124227-31124459,
           31125563-31125764
          Length = 937

 Score =  130 bits (315), Expect = 8e-31
 Identities = 66/173 (38%), Positives = 88/173 (50%)
 Frame = +2

Query: 176 HVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGR 355
           H  +T V      +P   Y A A +V D L+  W  T  YY   + K+ YYLS+E+  GR
Sbjct: 88  HAEFTPVFSPEHFSPLKAYHATAKSVLDTLIMNWNATYDYYDRTNVKQAYYLSMEFLQGR 147

Query: 356 SLQNTMINLGIQGTVDEALYQXXXXXXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLA 535
           +L N + NL + G   EAL Q                       RLA+CFLDS+ATL   
Sbjct: 148 ALTNAVGNLELTGQYAEALQQLGHSLEDVATQEPDAALGNGGLGRLASCFLDSLATLNYP 207

Query: 536 AYGYGIRYEYGIFAQKIENGEQQEEPDDWLRFGNPWEKARPEFMLPVNFYGSV 694
           A+GYG+RY++G+F        Q+E  ++WL  GNPWE  R +   PV FYG V
Sbjct: 208 AWGYGLRYKHGLFKANHTKDGQEEVAENWLEMGNPWEIVRTDVSYPVKFYGKV 260


>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
          Length = 1032

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 576 ANIPYSYLIPYPYAAR 529
           AN PYSY IP PY+A+
Sbjct: 106 ANYPYSYAIPVPYSAQ 121


>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
          Length = 633

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 GVQSSCPLHFSERSKCCDP 219
           GVQSS P  FS   K CDP
Sbjct: 563 GVQSSYPYDFSGNPKLCDP 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,839,421
Number of Sequences: 37544
Number of extensions: 383140
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)