Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2163
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    28   7.6  
AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical ...    28   7.6  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    28   7.6  

>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -2

Query: 414 LASFVQ-IPSASGTKDVVT*FTAHHVDCNSLCSRNCYYSSYKA*NVYIIFCYIFIMYRNV 238
           + +FV  + SA    ++VT  TA  +  +SL  ++ YY       + +IF  IF+ Y N 
Sbjct: 168 IGTFVAFLSSAFQISNIVTMPTAGFLCESSLGWKSIYYIFG---GITVIFYIIFLWYYND 224

Query: 237 GPNDFRSIDS 208
            PND +++ S
Sbjct: 225 TPNDHKNVSS 234


>Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical
           protein F21H7.12 protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -1

Query: 133 KVFHS-YCCNFIKKTCIFYF--VSCFIYIFSVV 44
           ++ HS Y C+ I    +F F  V+C +Y+FS+V
Sbjct: 130 RLIHSDYQCSIIVPISVFVFSIVTCIVYLFSIV 162


>Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical
           protein F09B12.3 protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 570 GRTIKRSAAFRKHIADRGHGEAHSLSQLKMFDRYNKF 680
           G   K  A+ R  I +R HG  H L  L    RYN +
Sbjct: 436 GDWFKWGASPRAKIFERDHGNVHDLDSLTALMRYNDY 472


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 118 YCCNFIKKTCIFYFVSCFIYIFSVV*FTSVCNYSN 14
           Y  N I  T +  F+S   +  SV  FT+ CN S+
Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279


>AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical
           protein Y75B8A.3 protein.
          Length = 827

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 276 YTHFTLYMNYNNSYGY 323
           YT+ T Y N NN+YGY
Sbjct: 584 YTNVTQYSNVNNNYGY 599


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 50  RKNIYKTRHKIKYACFFYEIATITMKD 130
           R N+YKT ++IKY    Y IA + + D
Sbjct: 175 RDNLYKTDNRIKYFFNEYSIAIVRVSD 201


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 118 YCCNFIKKTCIFYFVSCFIYIFSVV*FTSVCNYSN 14
           Y  N I  T +  F+S   +  SV  FT+ CN S+
Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,673
Number of Sequences: 27780
Number of extensions: 333246
Number of successful extensions: 824
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)