Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2161
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   1.3  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   1.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.0  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   5.2  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    25   9.0  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   9.0  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 36   KLS*EVFYSKHITIMVTCYALGFGINSTGVQLVVVSG 146
            K+S E+F +  + I++    L +G+N T   LV+V G
Sbjct: 1436 KISEELFVNNKVQILIATSTLAWGVN-TPAHLVIVKG 1471


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 371 RFYGRDEIPRIVENISHKSSI--VCFRYLTIDGVVLLEGGPG 490
           R  GR    +     S KS I  VCF + +IDG VL+ GG G
Sbjct: 15  RQLGRSTFRKFTTESSTKSPIADVCFAFDSIDG-VLIRGGRG 55


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 75   IMVTCYALGFGINSTGVQLVVVSG 146
            IM+   A G GIN  GV+LVV  G
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYG 1497


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 75   IMVTCYALGFGINSTGVQLVVVSG 146
            IM+   A G GIN  GV+LVV  G
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYG 1497


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 496  LGTGPPLEKYNAIY 455
            LG GP L KYNAIY
Sbjct: 1533 LGGGPMLVKYNAIY 1546


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 548 VVTGENPGVPNLIALQHIPFSP 613
           V+  E+ G+P+ + + H+P+ P
Sbjct: 138 VILHEHRGIPDGLVISHLPYGP 159


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 359 PSLQRFYGRDEIPRIVENISHKSSIVCF 442
           P +Q+      +PR VE +SH+++++ F
Sbjct: 112 PPIQKVIDAGVVPRFVEFLSHENNLLKF 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,978
Number of Sequences: 5004
Number of extensions: 44375
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)